y
Basic Information | |
---|---|
Species | Manihot esculenta |
Cazyme ID | cassava4.1_026309m |
Family | CE8 |
Protein Properties | Length: 388 Molecular Weight: 42578.6 Isoelectric Point: 6.3362 |
Chromosome | Chromosome/Scaffold: 07215 Start: 64907 End: 67634 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 85 | 377 | 0 |
CVDRNGCCNFTTVQSAVDAVANFSQKRTIIWINSGIYYEKVTVPRNKQNITFQGQGYTSTAIVWNDTANSSHGTFYSGSVQVFSNNFIAKNISFMNVAPI PGPGDIGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDRGRHYFKECYIQGSIDFIFGDARSFYEDCQLISMANPVAAGQRVINGAVTAHGRSSKEENTGF AFVNCSIGGSGRIWLGRAWRPFSRVVFAFTSMSDIIAPEGWNDFNDPSRDQTIFYGEYNCSGAGANTSTRAAYVQRLNDTQASTFLNISFIDG |
Full Sequence |
---|
Protein Sequence Length: 388 Download |
MMSLKSISLT FAVAISAVLA STFVINPSPS LFLKQLIELG FTIEAHFYHQ HHHNKHPSKD 60 QIVNICDDFP PDIPPPDTNI TSTLCVDRNG CCNFTTVQSA VDAVANFSQK RTIIWINSGI 120 YYEKVTVPRN KQNITFQGQG YTSTAIVWND TANSSHGTFY SGSVQVFSNN FIAKNISFMN 180 VAPIPGPGDI GAQAVAIRIA GDQAAFWGCG FFGAQDTLHD DRGRHYFKEC YIQGSIDFIF 240 GDARSFYEDC QLISMANPVA AGQRVINGAV TAHGRSSKEE NTGFAFVNCS IGGSGRIWLG 300 RAWRPFSRVV FAFTSMSDII APEGWNDFND PSRDQTIFYG EYNCSGAGAN TSTRAAYVQR 360 LNDTQASTFL NISFIDGDQW LLSYNNS* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 3.0e-94 | 86 | 381 | 296 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 8.0e-101 | 84 | 381 | 306 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 3.0e-110 | 83 | 382 | 301 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 6.0e-126 | 83 | 382 | 307 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 0 | 28 | 386 | 359 | + probable pectinesterase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN08648.1 | 0 | 2 | 381 | 1 | 387 | Pectinesterase [Medicago truncatula] |
RefSeq | NP_172023.1 | 0 | 63 | 381 | 70 | 388 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002267842.1 | 0 | 2 | 384 | 1 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323171.1 | 0 | 19 | 386 | 1 | 380 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521065.1 | 0 | 1 | 385 | 1 | 395 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 84 | 381 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 5e-40 | 80 | 383 | 1 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 9e-17 | 96 | 369 | 17 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 9e-17 | 96 | 369 | 17 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 9e-17 | 96 | 369 | 17 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |