y
Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi2g19420.1 |
Family | CE8 |
Protein Properties | Length: 339 Molecular Weight: 36235.4 Isoelectric Point: 10.814 |
Chromosome | Chromosome/Scaffold: 2 Start: 17110692 End: 17113120 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 113 | 296 | 0 |
VVDKSPGAGNFTSIQAAVDSLPLINLARVVIRVNPGTYTEKVNISPMRGFVTVEGAAGAEKTVVQWGDTAETAGPWGRRSPLGTFASATFAVNAQFFVAK NITFKNTAPVPRPGALGKQGVALRISADNAAFVGCNFLGAQDTLYDHLGRHYYRDCYIEGSVDFIFGNALSLYEDGVLRAVQVH |
Full Sequence |
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Protein Sequence Length: 339 Download |
MAMPWARLLA CVVAVLLLLG ANVVESGSRH QGRHHGRSSK SPLRRPGKKQ AASPGPAKKR 60 NETREAEAIE LGFTSWVQYM GGPEHSAFLR ALRLNVDVPA RGASFLSPVR TLVVDKSPGA 120 GNFTSIQAAV DSLPLINLAR VVIRVNPGTY TEKVNISPMR GFVTVEGAAG AEKTVVQWGD 180 TAETAGPWGR RSPLGTFASA TFAVNAQFFV AKNITFKNTA PVPRPGALGK QGVALRISAD 240 NAAFVGCNFL GAQDTLYDHL GRHYYRDCYI EGSVDFIFGN ALSLYEDGVL RAVQVHGAGG 300 QLRRQGGLVE GAHRRGGQAV HLPQLHRWVG MAQVVARN* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02773 | PLN02773 | 6.0e-51 | 107 | 286 | 182 | + pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-54 | 109 | 285 | 177 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 4.0e-60 | 109 | 287 | 179 | + probable pectinesterase | ||
PLN02634 | PLN02634 | 2.0e-60 | 107 | 293 | 187 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-129 | 46 | 293 | 248 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD87905.1 | 0 | 1 | 308 | 1 | 280 | pectinesterase-like [Oryza sativa Japonica Group] |
GenBank | EEC79546.1 | 0 | 1 | 293 | 5 | 278 | hypothetical protein OsI_20666 [Oryza sativa Indica Group] |
RefSeq | NP_001044216.1 | 0 | 1 | 308 | 1 | 280 | Os01g0743200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001056077.1 | 0 | 1 | 293 | 5 | 278 | Os05g0521600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002440102.1 | 0 | 45 | 310 | 48 | 304 | hypothetical protein SORBIDRAFT_09g026060 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2e-24 | 113 | 292 | 9 | 174 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-20 | 119 | 292 | 11 | 170 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 2e-18 | 113 | 287 | 34 | 214 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 0.000000000006 | 113 | 290 | 7 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.000000000006 | 113 | 290 | 7 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |