y
Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10004453m |
Family | CE8 |
Protein Properties | Length: 365 Molecular Weight: 39965.7 Isoelectric Point: 9.7711 |
Chromosome | Chromosome/Scaffold: 6 Start: 2380611 End: 2382289 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 70 | 353 | 0 |
KVKQNGRGHFKTLTEAIKSVPAGNTRRVIIKLGPGVYKEKITIDRNKPFITLYGHPNAMPVLTFDGTAAQYGTVDSATLIVLSDYFMAVNIIVKNSAPMP DGKRKGAQALSMRISGNKAAFYNCKFYGYQDTICDDTGNHFFKDCYIEGTFDFIFGSGRSLYLRTQLNVVGDGLRVITAHAGKSAAEKSGYSFVHCKVTG TGTGVYLGRAWMSHPKVVYAYTDMSSVVNPSGWQDNGQTERDKTVFYGEYKCSGPGSNKEKRVKYTQDIDNIEANSFISLGYIQ |
Full Sequence |
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Protein Sequence Length: 365 Download |
MGYKYVSLIV TILLVVITSP IVSGNDASPI PQNKRRIEQW FNTNVPSLAS RKGTLDPALL 60 TAEASPRVIK VKQNGRGHFK TLTEAIKSVP AGNTRRVIIK LGPGVYKEKI TIDRNKPFIT 120 LYGHPNAMPV LTFDGTAAQY GTVDSATLIV LSDYFMAVNI IVKNSAPMPD GKRKGAQALS 180 MRISGNKAAF YNCKFYGYQD TICDDTGNHF FKDCYIEGTF DFIFGSGRSL YLRTQLNVVG 240 DGLRVITAHA GKSAAEKSGY SFVHCKVTGT GTGVYLGRAW MSHPKVVYAY TDMSSVVNPS 300 GWQDNGQTER DKTVFYGEYK CSGPGSNKEK RVKYTQDIDN IEANSFISLG YIQGSSWLLP 360 PPTL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 2.0e-85 | 67 | 360 | 302 | + probable pectinesterase | ||
PLN02304 | PLN02304 | 8.0e-88 | 71 | 360 | 299 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 4.0e-93 | 68 | 358 | 291 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 3.0e-103 | 67 | 360 | 302 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 24 | 364 | 342 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG52566.1 | 0 | 21 | 364 | 1 | 338 | AC010675_14 putative pectin methylesterase; 8433-9798 [Arabidopsis thaliana] |
DDBJ | BAB09012.1 | 0 | 25 | 364 | 25 | 364 | pectin methylesterase-like protein [Arabidopsis thaliana] |
RefSeq | NP_177152.2 | 0 | 1 | 364 | 1 | 361 | PPME1; pectinesterase [Arabidopsis thaliana] |
RefSeq | NP_200976.1 | 0 | 25 | 364 | 25 | 338 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_568181.1 | 0 | 1 | 364 | 1 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 8e-36 | 71 | 358 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 1e-33 | 66 | 358 | 7 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 3uw0_A | 7e-20 | 78 | 345 | 43 | 330 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 1e-19 | 68 | 342 | 8 | 327 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 1e-19 | 68 | 342 | 8 | 327 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |