y
Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna00138.1-v1.0-hybrid |
Family | CE8 |
Protein Properties | Length: 339 Molecular Weight: 37628.3 Isoelectric Point: 4.9181 |
Chromosome | Chromosome/Scaffold: 6 Start: 3401817 End: 3403205 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 39 | 323 | 0 |
IVVDKSGLGNFTSVQQAIDSIPSNNLLWTRILISSGTYIEKVEIPREKPYIILEGNPNGLTTIEYGDAGNVVESPTFKLQADNFIARHVTFKNTYNTLLE MDDEVRNVTWAPAAAIAGDKASFYQCGFISLQDTLSDARGRHYFYDSYVEGAIDFIWGNGQSMYEKCQINSTTSRIGRAGFITAQGRESANETTGFVFKH CYVSGSGPIFLGRSYRNYSRVLFAGTYMEDIITPEGWNLPSWSVGSEDLITFSEANCSGPGANMSYRVKWEKQLSHQELMHLTNT |
Full Sequence |
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Protein Sequence Length: 339 Download |
MQSLLSKLLP LLLFIGALEA RYSSTAVKSG LPNCVSRTIV VDKSGLGNFT SVQQAIDSIP 60 SNNLLWTRIL ISSGTYIEKV EIPREKPYII LEGNPNGLTT IEYGDAGNVV ESPTFKLQAD 120 NFIARHVTFK NTYNTLLEMD DEVRNVTWAP AAAIAGDKAS FYQCGFISLQ DTLSDARGRH 180 YFYDSYVEGA IDFIWGNGQS MYEKCQINST TSRIGRAGFI TAQGRESANE TTGFVFKHCY 240 VSGSGPIFLG RSYRNYSRVL FAGTYMEDII TPEGWNLPSW SVGSEDLITF SEANCSGPGA 300 NMSYRVKWEK QLSHQELMHL TNTTDFINQE GWIDEQPN* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 2.0e-84 | 37 | 338 | 313 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 1.0e-84 | 39 | 333 | 298 | + putative pectinesterase | ||
PLN02480 | PLN02480 | 5.0e-85 | 37 | 333 | 300 | + Probable pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-87 | 14 | 333 | 340 | + pectinesterase family protein | ||
PLN02497 | PLN02497 | 5.0e-116 | 36 | 337 | 305 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 3e-34 | 33 | 309 | 3 | 282 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 7e-31 | 40 | 308 | 6 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.000000000006 | 30 | 321 | 24 | 353 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.0000000002 | 49 | 207 | 18 | 190 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.0000000002 | 49 | 207 | 18 | 190 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |