y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma01g41820.1 |
Family | CE8 |
Protein Properties | Length: 364 Molecular Weight: 40322.5 Isoelectric Point: 9.0022 |
Chromosome | Chromosome/Scaffold: 01 Start: 53220670 End: 53224612 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 62 | 353 | 0 |
ITVDINGGGHYRSVQDAVNAVPDNNRRNVLIQINAGCYKEKVVVPVTKPYITFEGAGKEVTVIEWHDRASDPGPSGQQLRTYRTASVTVFASYFSARNIS FKNTAPAPMPGMQGWQAVAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAHDRKQPEEKTGFA FVRCKVTGTGPLYVGRAMGQYSRIVYSYTYFDDIVAHGGWDDWDHAHNKNKTVFFGVYKCWGPGAEAVRGVSWARDLDFEAAHPFIRKSFVN |
Full Sequence |
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Protein Sequence Length: 364 Download |
MTSSSLLVSL QVALAIFACI FHAATVTCKP HHRDRTLKIF SSTSNSSKSS HHWIGPIGHR 60 KITVDINGGG HYRSVQDAVN AVPDNNRRNV LIQINAGCYK EKVVVPVTKP YITFEGAGKE 120 VTVIEWHDRA SDPGPSGQQL RTYRTASVTV FASYFSARNI SFKNTAPAPM PGMQGWQAVA 180 FRISGDKAYF SGCGFYGAQD TLCDDAGRHY FKECYIEGSI DFIFGNGRSM YKDCELHSIA 240 TRFGSIAAHD RKQPEEKTGF AFVRCKVTGT GPLYVGRAMG QYSRIVYSYT YFDDIVAHGG 300 WDDWDHAHNK NKTVFFGVYK CWGPGAEAVR GVSWARDLDF EAAHPFIRKS FVNGRHWIAP 360 SDA* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 9.0e-106 | 62 | 363 | 311 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 7.0e-106 | 60 | 360 | 303 | + pectinesterase family protein | ||
PLN02671 | PLN02671 | 3.0e-116 | 58 | 358 | 303 | + pectinesterase | ||
PLN02682 | PLN02682 | 4.0e-138 | 60 | 360 | 302 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 0 | 51 | 363 | 313 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD64977.1 | 0 | 1 | 363 | 7 | 360 | pectinesterase family protein [Brassica oleracea] |
GenBank | ABD65006.1 | 0 | 39 | 363 | 16 | 344 | pectinesterase family protein [Brassica oleracea] |
EMBL | CBI31927.1 | 0 | 43 | 363 | 29 | 349 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266321.1 | 0 | 43 | 363 | 36 | 356 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002303355.1 | 0 | 47 | 360 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1.99965e-42 | 54 | 358 | 5 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-34 | 67 | 358 | 10 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 8e-17 | 69 | 238 | 15 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 8e-17 | 69 | 238 | 15 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 9e-17 | 69 | 238 | 15 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |