y
Basic Information | |
---|---|
Species | Glycine max |
Cazyme ID | Glyma09g03960.1 |
Family | CE8 |
Protein Properties | Length: 347 Molecular Weight: 38714.9 Isoelectric Point: 8.3365 |
Chromosome | Chromosome/Scaffold: 09 Start: 2897983 End: 2899972 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 53 | 337 | 0 |
KVDINGNGEFKSIQAAIDSIPEGNSKWVIVHVRKGIYREKVHVPQNKPYIFMRGNGRGKTAIVWSQSSEDNIDSATFKVEAHDFIAFGISFKNEAPTGIA YTSQNQSVAAFVAADKVAFYHCAFYSTHNTLFDYKGRHYYESCYIQGSIDFIFGRGRSIFHKADIFVVDDKRVTIKGSVTAQNRESEGEMSGFIFIKGKV YGIGGVYLGRAKGPYSRVIFAETYLSKTIVPEGWTNWSYDGSTKDLYHAEYECHGPGALTTGRAPWSRQLTKEEVAPFISIDYID |
Full Sequence |
---|
Protein Sequence Length: 347 Download |
MASPRSWLSF HVSSFIVTIL IFCLSHCALC LDGQTVVDSP LLTEKLGINR TIKVDINGNG 60 EFKSIQAAID SIPEGNSKWV IVHVRKGIYR EKVHVPQNKP YIFMRGNGRG KTAIVWSQSS 120 EDNIDSATFK VEAHDFIAFG ISFKNEAPTG IAYTSQNQSV AAFVAADKVA FYHCAFYSTH 180 NTLFDYKGRH YYESCYIQGS IDFIFGRGRS IFHKADIFVV DDKRVTIKGS VTAQNRESEG 240 EMSGFIFIKG KVYGIGGVYL GRAKGPYSRV IFAETYLSKT IVPEGWTNWS YDGSTKDLYH 300 AEYECHGPGA LTTGRAPWSR QLTKEEVAPF ISIDYIDGKN WLPAWV* 360 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02497 | PLN02497 | 2.0e-81 | 50 | 342 | 297 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 2.0e-85 | 38 | 342 | 308 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 3.0e-86 | 52 | 342 | 291 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 8.0e-93 | 50 | 343 | 304 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 0 | 1 | 345 | 345 | + Probable pectinesterase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU23222.1 | 0 | 1 | 346 | 1 | 346 | unknown [Glycine max] |
RefSeq | NP_188331.1 | 0 | 15 | 346 | 9 | 340 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002272939.1 | 0 | 1 | 346 | 1 | 348 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311381.1 | 0 | 11 | 345 | 7 | 341 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523016.1 | 0 | 28 | 346 | 33 | 350 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 3.99931e-42 | 44 | 344 | 1 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-34 | 57 | 342 | 10 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.00000000000005 | 61 | 330 | 43 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 0.00000000000006 | 62 | 343 | 18 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.00000000000006 | 62 | 343 | 18 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |