y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 487574 |
Family | CE8 |
Protein Properties | Length: 362 Molecular Weight: 39906.6 Isoelectric Point: 9.2486 |
Chromosome | Chromosome/Scaffold: 6 Start: 2905582 End: 2907316 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 67 | 350 | 0 |
ITVNQKGGANFKTINEAIKSIPTGNKNRVIIKLAPGVYNEKVTIDIARPFVTLLGQPGAETVLTYHGTAAKYGTVESATLIVWAEYFLAAHLTIKNTAPM PKPGSQGQALAMRINADKAAFYSCRFHGFQDTLCDDKGNHFFKDCYIEGTYDFIFGRGASLYLNTQLHAVGDGLRVITAQGRQSANEQNGYTFVHCKVTG TGTGIYLGRSWMSHPKVVYAFTEMTSVVNPSGWRENLNRGYDKTVFYGEYKCFGPGSHLEKRVPYTQDIDQNEVRPFLSLGYIK |
Full Sequence |
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Protein Sequence Length: 362 Download |
MGYISMSVVA FLVVFASPLV LATDTDPIPE TRAQIPQWFK ANVKPYSQRK GTLDPALEAA 60 EAARQIITVN QKGGANFKTI NEAIKSIPTG NKNRVIIKLA PGVYNEKVTI DIARPFVTLL 120 GQPGAETVLT YHGTAAKYGT VESATLIVWA EYFLAAHLTI KNTAPMPKPG SQGQALAMRI 180 NADKAAFYSC RFHGFQDTLC DDKGNHFFKD CYIEGTYDFI FGRGASLYLN TQLHAVGDGL 240 RVITAQGRQS ANEQNGYTFV HCKVTGTGTG IYLGRSWMSH PKVVYAFTEM TSVVNPSGWR 300 ENLNRGYDKT VFYGEYKCFG PGSHLEKRVP YTQDIDQNEV RPFLSLGYIK GSTWLLPPPK 360 Y* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 6.0e-89 | 66 | 357 | 302 | + probable pectinesterase | ||
PLN02634 | PLN02634 | 3.0e-89 | 65 | 357 | 302 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 9.0e-97 | 66 | 355 | 290 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 8.0e-112 | 8 | 357 | 368 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 1 | 361 | 363 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG52566.1 | 0 | 19 | 359 | 1 | 336 | AC010675_14 putative pectin methylesterase; 8433-9798 [Arabidopsis thaliana] |
RefSeq | NP_177152.2 | 0 | 1 | 359 | 1 | 359 | PPME1; pectinesterase [Arabidopsis thaliana] |
RefSeq | NP_196359.1 | 0 | 24 | 361 | 24 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_196360.1 | 0 | 24 | 361 | 24 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_568181.1 | 0 | 1 | 359 | 1 | 359 | pectinesterase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 8.99998e-41 | 67 | 355 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 5e-38 | 69 | 355 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 2e-21 | 74 | 286 | 41 | 276 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 6e-20 | 66 | 233 | 7 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 6e-20 | 66 | 233 | 7 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |