y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10007113 |
Family | CE8 |
Protein Properties | Length: 189 Molecular Weight: 20632 Isoelectric Point: 7.4569 |
Chromosome | Chromosome/Scaffold: 128 Start: 27624 End: 28338 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 3 | 188 | 5.74532e-44 |
REKVVVPVTKAYISLIGNESDVSTTVITWHNKTFNLDSNGNELGTFKSASVTVSSDYFCATGITFQGIYYWAEFGGGRSRRAWDASSALRVSGDKAFFYR VKIAGSQDTLLDDTGSHYYYQSHILGSSDFLFGRGRSLFQDCIVESKAERCGAIADHHRDSGNDETGFSFVGCLIRGTGKILLGRA |
Full Sequence |
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Protein Sequence Length: 189 Download |
MCREKVVVPV TKAYISLIGN ESDVSTTVIT WHNKTFNLDS NGNELGTFKS ASVTVSSDYF 60 CATGITFQGI YYWAEFGGGR SRRAWDASSA LRVSGDKAFF YRVKIAGSQD TLLDDTGSHY 120 YYQSHILGSS DFLFGRGRSL FQDCIVESKA ERCGAIADHH RDSGNDETGF SFVGCLIRGT 180 GKILLGRA* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 2.0e-35 | 4 | 188 | 194 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-41 | 3 | 187 | 185 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-46 | 3 | 188 | 186 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 2.0e-50 | 3 | 188 | 186 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 2.0e-87 | 3 | 188 | 186 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001060235.1 | 0 | 3 | 188 | 113 | 291 | Os07g0607400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_200370.1 | 0 | 3 | 188 | 120 | 299 | QRT1 (QUARTET 1); pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002264297.1 | 0 | 3 | 188 | 99 | 278 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298857.1 | 0 | 3 | 188 | 58 | 237 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522727.1 | 0 | 3 | 188 | 123 | 302 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2ntq_B | 0.0000000005 | 38 | 149 | 76 | 193 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
PDB | 2ntq_A | 0.0000000005 | 38 | 149 | 76 | 193 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
PDB | 2ntp_B | 0.0000000005 | 38 | 149 | 76 | 193 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
PDB | 2ntp_A | 0.0000000005 | 38 | 149 | 76 | 193 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
PDB | 2ntb_B | 0.0000000005 | 38 | 149 | 76 | 193 | A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GH171677 | 179 | 12 | 188 | 0 |
EL423097 | 169 | 3 | 171 | 0 |
BE495444 | 181 | 3 | 183 | 0 |
BE494904 | 183 | 6 | 188 | 0 |
EG517791 | 186 | 3 | 188 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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