y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10021724m |
Family | CE8 |
Protein Properties | Length: 340 Molecular Weight: 38513.7 Isoelectric Point: 4.5906 |
Chromosome | Chromosome/Scaffold: 2 Start: 3547113 End: 3550208 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 32 | 312 | 0 |
IVVGNDGEADFKTIQKAIDSIPSGNNMSWIKIEINPGIYNEKIVIPMDKQKIIMQGNNASEVIIQYNDAGISNSSGPFTLNAEYFIAIDITFMNTYNKRT PIIQYEQIKVAPSVILTADKAWFYSCRFISVQDTVADFFGRHYFQNCYIEGAIDFIWGGGQSVFQVNYKCVLIQMLTGYITAQGRQSEEDTSGFVFVNCE IKGSGKTFLGRAYRAYSRVIFYQTIMSSVIVHQGWDPMKYQGEEDNFTFAEIDCTGKGANKTGRVKWEKNYTAQDVESLIE |
Full Sequence |
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Protein Sequence Length: 340 Download |
MFNNCLTGFF LFFFFVNELE PRGFDKDVET TIVVGNDGEA DFKTIQKAID SIPSGNNMSW 60 IKIEINPGIY NEKIVIPMDK QKIIMQGNNA SEVIIQYNDA GISNSSGPFT LNAEYFIAID 120 ITFMNTYNKR TPIIQYEQIK VAPSVILTAD KAWFYSCRFI SVQDTVADFF GRHYFQNCYI 180 EGAIDFIWGG GQSVFQVNYK CVLIQMLTGY ITAQGRQSEE DTSGFVFVNC EIKGSGKTFL 240 GRAYRAYSRV IFYQTIMSSV IVHQGWDPMK YQGEEDNFTF AEIDCTGKGA NKTGRVKWEK 300 NYTAQDVESL IEPKTFINGD GWMASLPSSL TTFLPYFFE* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02176 | PLN02176 | 2.0e-76 | 31 | 327 | 305 | + putative pectinesterase | ||
PLN02480 | PLN02480 | 1.0e-76 | 31 | 323 | 298 | + Probable pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-77 | 31 | 323 | 307 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 8.0e-81 | 27 | 323 | 301 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 3.0e-92 | 31 | 327 | 306 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 31 | 327 | 44 | 341 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002263748.1 | 0 | 31 | 327 | 31 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002455508.1 | 0 | 18 | 327 | 24 | 337 | hypothetical protein SORBIDRAFT_03g012410 [Sorghum bicolor] |
RefSeq | XP_002512520.1 | 0 | 28 | 312 | 29 | 316 | Pectinesterase-2 precursor, putative [Ricinus communis] |
RefSeq | XP_002529267.1 | 0 | 22 | 328 | 30 | 338 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 3e-34 | 28 | 330 | 5 | 317 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-22 | 33 | 325 | 6 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.00000000002 | 36 | 277 | 13 | 290 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.00000000002 | 36 | 277 | 13 | 290 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.00000000002 | 36 | 277 | 13 | 290 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |