y
Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_021727m |
Family | CE8 |
Protein Properties | Length: 374 Molecular Weight: 40640.5 Isoelectric Point: 5.323 |
Chromosome | Chromosome/Scaffold: 09876 Start: 901462 End: 902871 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 72 | 362 | 0 |
IKVRADGSGEFKTITDAVKSIPAKNTQRIIVDIGPGTYTEKVIIEEDKPFITFLGPEGGERPTLAFGDTAAKTVAPYTATLEVDSDFFVASNLIIQNTAP RPKGERKPAQAAVAFRIGGNMGAFYNVKMIGFLNTLCDDKGSHFFKDCFIEGTYDFIFGNGKSIYLQTEINVLADVPKELNVITAQARESEDQDVGFSIV HCKVGGKGSGAYLGEPLRPMPKVVFAYCAMSDVVNVKGWINNNFVPKAEGDFFFGEYKNTGPGADPAGRVKFAKQLTEEEVKPFLNLGYIK |
Full Sequence |
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Protein Sequence Length: 374 Download |
MVKHLDFLSF AQYIFFAIIL AAIPARSDDE TPIPDTPDGV KTWFDANVKP LADRAGTLEK 60 ALEAAEAKPK TIKVRADGSG EFKTITDAVK SIPAKNTQRI IVDIGPGTYT EKVIIEEDKP 120 FITFLGPEGG ERPTLAFGDT AAKTVAPYTA TLEVDSDFFV ASNLIIQNTA PRPKGERKPA 180 QAAVAFRIGG NMGAFYNVKM IGFLNTLCDD KGSHFFKDCF IEGTYDFIFG NGKSIYLQTE 240 INVLADVPKE LNVITAQARE SEDQDVGFSI VHCKVGGKGS GAYLGEPLRP MPKVVFAYCA 300 MSDVVNVKGW INNNFVPKAE GDFFFGEYKN TGPGADPAGR VKFAKQLTEE EVKPFLNLGY 360 IKGTSWLLPP PKV* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02480 | PLN02480 | 2.0e-70 | 70 | 367 | 299 | + Probable pectinesterase | ||
PLN02304 | PLN02304 | 5.0e-71 | 71 | 369 | 306 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 3.0e-71 | 72 | 367 | 296 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-85 | 71 | 369 | 308 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 27 | 372 | 346 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002318197.1 | 0 | 12 | 371 | 8 | 363 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321778.1 | 0 | 15 | 371 | 12 | 361 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511042.1 | 0 | 27 | 371 | 27 | 364 | Pectinesterase-1 precursor, putative [Ricinus communis] |
RefSeq | XP_002511043.1 | 0 | 1 | 371 | 1 | 364 | Pectinesterase-1 precursor, putative [Ricinus communis] |
RefSeq | XP_002511045.1 | 0 | 1 | 371 | 1 | 365 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 8.00001e-41 | 63 | 367 | 1 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-31 | 74 | 367 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.000000000002 | 73 | 355 | 10 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.000000000002 | 73 | 355 | 10 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.000000000002 | 73 | 355 | 10 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |