y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.010G077800.1 |
Family | CE8 |
Protein Properties | Length: 382 Molecular Weight: 42026.9 Isoelectric Point: 9.3307 |
Chromosome | Chromosome/Scaffold: 10 Start: 11242183 End: 11244984 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 84 | 375 | 0 |
TVDKNPAKGDFTTIQDAIDSLPLVNLVRVVIKVHAGVYTEKVNIPPFKSFITIEGSGADETIVQWGDTAQTAGPRGQPLGTYASATFAVNSPYFIAKNIT FKNTTPVPPPGAVGKQAVAFRISADTATFLGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNGLSLFEGCHVHAIATLTGAVTAQGRGSMLDDTGFS FVNCKVTGSGALYLGRAWGPFSRVIFAYTYMDNIIIPKGWYNWGDPSREMTVFYGQYKCTGPGASFAGRVSWSRELTDEEAKPFLSLSFIDG |
Full Sequence |
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Protein Sequence Length: 382 Download |
MSKFQRFLYI TFIFFLLNSG HALCHTKGIR FRSSKGKHSH RQSTMTGTHG SEQQFMQWVK 60 FVGSLNHSVF KTAKNKLFPS YTLTVDKNPA KGDFTTIQDA IDSLPLVNLV RVVIKVHAGV 120 YTEKVNIPPF KSFITIEGSG ADETIVQWGD TAQTAGPRGQ PLGTYASATF AVNSPYFIAK 180 NITFKNTTPV PPPGAVGKQA VAFRISADTA TFLGCKFLGA QDTLYDHLGR HYYKDCYIEG 240 SVDFIFGNGL SLFEGCHVHA IATLTGAVTA QGRGSMLDDT GFSFVNCKVT GSGALYLGRA 300 WGPFSRVIFA YTYMDNIIIP KGWYNWGDPS REMTVFYGQY KCTGPGASFA GRVSWSRELT 360 DEEAKPFLSL SFIDGSEWIK L* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 1.0e-115 | 72 | 380 | 309 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 7.0e-118 | 82 | 380 | 307 | + probable pectinesterase | ||
PLN02634 | PLN02634 | 4.0e-119 | 83 | 379 | 298 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-119 | 82 | 379 | 300 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 0 | 51 | 381 | 331 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN63186.1 | 0 | 1 | 381 | 1 | 379 | hypothetical protein [Vitis vinifera] |
EMBL | CBI27989.1 | 0 | 69 | 381 | 1 | 313 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197474.1 | 0 | 19 | 381 | 23 | 383 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002330522.1 | 0 | 15 | 381 | 17 | 381 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002514210.1 | 0 | 8 | 381 | 10 | 383 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 92 | 380 | 17 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 5.00264e-43 | 92 | 380 | 13 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 7e-30 | 81 | 374 | 31 | 360 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 2e-19 | 80 | 367 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 2e-19 | 80 | 367 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |