y
Basic Information | |
---|---|
Species | Citrus clementina |
Cazyme ID | Ciclev10013444m |
Family | CE8 |
Protein Properties | Length: 401 Molecular Weight: 44898.6 Isoelectric Point: 6.6489 |
Chromosome | Chromosome/Scaffold: 6 Start: 6311397 End: 6313802 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 99 | 388 | 0 |
TVDLHGCANFSSVQKAVDAVPSFSPSKTLIIIDSATYREKVVVNANKTNLIFLGRGYLNTIIEWNDTANSTGGTAYSSSVAVFASNFTAYNISFMNTAPR PSPGDVGGQAVALRIGGDQAAFYNCGFYGAQDTLYDDHGRHYFKDCFIQGSIDFIFGNARSLYEDCTINSIAEQVPDGMVSGSITAQGRQSMSEETGFSF VNCQIDGTGRVWLGRAWGVCAAVVFSKTYMADVVSSDGWNDWQDPSRDLTVFFGEYDCLGPGANYSYRASFGKQLMQYEAAPYMNISYID |
Full Sequence |
---|
Protein Sequence Length: 401 Download |
MRSNSFWVFA FAVSLLSIIF SLFITIPPHS STTTTIISLT QIPILIMRVI VEDLLSLVTR 60 HHHHHHHHRV KCDKNNWRLR IISHYKWLVY HYRVSLILTV DLHGCANFSS VQKAVDAVPS 120 FSPSKTLIII DSATYREKVV VNANKTNLIF LGRGYLNTII EWNDTANSTG GTAYSSSVAV 180 FASNFTAYNI SFMNTAPRPS PGDVGGQAVA LRIGGDQAAF YNCGFYGAQD TLYDDHGRHY 240 FKDCFIQGSI DFIFGNARSL YEDCTINSIA EQVPDGMVSG SITAQGRQSM SEETGFSFVN 300 CQIDGTGRVW LGRAWGVCAA VVFSKTYMAD VVSSDGWNDW QDPSRDLTVF FGEYDCLGPG 360 ANYSYRASFG KQLMQYEAAP YMNISYIDGD EWLHHHQDIL F 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 2.0e-93 | 95 | 393 | 300 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 1.0e-104 | 83 | 393 | 318 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 4.0e-107 | 97 | 393 | 298 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 4.0e-126 | 94 | 395 | 309 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 3.0e-151 | 97 | 393 | 299 | + probable pectinesterase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI30191.1 | 0 | 32 | 393 | 30 | 399 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_181209.1 | 0 | 72 | 395 | 74 | 387 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002264941.1 | 0 | 97 | 393 | 14 | 309 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002326223.1 | 0 | 86 | 400 | 3 | 319 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519425.1 | 0 | 28 | 397 | 31 | 371 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2.94273e-44 | 98 | 394 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-37 | 100 | 394 | 7 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.000000000000004 | 108 | 303 | 18 | 227 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.000000000000004 | 108 | 303 | 18 | 227 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.000000000000004 | 108 | 303 | 18 | 227 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |