y
Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi5g17850.1 |
Family | CE8 |
Protein Properties | Length: 354 Molecular Weight: 38790.8 Isoelectric Point: 8.686 |
Chromosome | Chromosome/Scaffold: 5 Start: 20989598 End: 20991844 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 53 | 344 | 0 |
IVVDATGAGDFLSIQQAVDSVPANNTVRVIMQINAGSYIEKVLVPASKPYITFEGAGRDVTVVEWHDRASDRGPDGQQLRTYNSASVTVLSNYFTAKNIS FKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDAGRHYFRDCYIQGSIDFIFGNGRSLYKDCELHSTAQRFGSVAAQGRNGPCERTGFA FVNCRVTGTGQLYVGRAMGQYSRIVYAYTYFDSVIAPRGWDDWDHTSNKSMTAFFGMYRNWGPGADAVHGVPWARELDYFSARPFLGKSFVN |
Full Sequence |
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Protein Sequence Length: 354 Download |
MGRRLLLVLA AALASLVPLL ISCQAATTPT PCEAARRGSG HHQYRQPVGV RRIVVDATGA 60 GDFLSIQQAV DSVPANNTVR VIMQINAGSY IEKVLVPASK PYITFEGAGR DVTVVEWHDR 120 ASDRGPDGQQ LRTYNSASVT VLSNYFTAKN ISFKNTAPAP MPGMQGWQAV AFRISGDKAF 180 FFGCGFYGAQ DTLCDDAGRH YFRDCYIQGS IDFIFGNGRS LYKDCELHST AQRFGSVAAQ 240 GRNGPCERTG FAFVNCRVTG TGQLYVGRAM GQYSRIVYAY TYFDSVIAPR GWDDWDHTSN 300 KSMTAFFGMY RNWGPGADAV HGVPWARELD YFSARPFLGK SFVNGFHWLA PDV* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 3.0e-107 | 53 | 351 | 309 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 3.0e-108 | 50 | 351 | 304 | + pectinesterase family protein | ||
PLN02671 | PLN02671 | 3.0e-118 | 49 | 349 | 303 | + pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-143 | 51 | 351 | 302 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 0 | 21 | 351 | 331 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACL53825.1 | 0 | 32 | 353 | 30 | 349 | unknown [Zea mays] |
EMBL | CAD41229.2 | 0 | 5 | 353 | 1 | 344 | OSJNBa0010H02.16 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002266321.1 | 0 | 17 | 351 | 23 | 353 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002303355.1 | 0 | 41 | 351 | 4 | 314 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002448293.1 | 0 | 4 | 353 | 5 | 350 | hypothetical protein SORBIDRAFT_06g024730 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 53 | 349 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-35 | 54 | 349 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 2e-20 | 54 | 259 | 34 | 253 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 6e-18 | 63 | 229 | 18 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 6e-18 | 63 | 229 | 18 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |