y
Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr4g130790.1 |
Family | CE8 |
Protein Properties | Length: 267 Molecular Weight: 29882.4 Isoelectric Point: 4.5467 |
Chromosome | Chromosome/Scaffold: 4 Start: 45952159 End: 45953364 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 47 | 216 | 0 |
QNNNQWFKIHINPGIYWETITIPISSPCIILEGSGSNATTIISSQRETTSDWGSTFSSFATNVIVSDITFKNSYNLEGGSDDIEQALSAAFYGDKSAIFN SSFMSYQDTLFAAKGRHYFKDMLCYIQGDVDFIFGSGQSYFENCMINATQKDSEPSGFVTAQRRENDSDT |
Full Sequence |
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Protein Sequence Length: 267 Download |
MGMLLSQMFF PLIMFITGCF CLSRAQDCGG SNVQNTVIVD QQPGKEQNNN QWFKIHINPG 60 IYWETITIPI SSPCIILEGS GSNATTIISS QRETTSDWGS TFSSFATNVI VSDITFKNSY 120 NLEGGSDDIE QALSAAFYGD KSAIFNSSFM SYQDTLFAAK GRHYFKDMLC YIQGDVDFIF 180 GSGQSYFENC MINATQKDSE PSGFVTAQRR ENDSDTSDSA QRRERVSWMK KKNLNNSEVN 240 EYSLSSFINK NGWLTNILYI LVNFLL* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02480 | PLN02480 | 9.0e-32 | 47 | 216 | 171 | + Probable pectinesterase | ||
PLN02176 | PLN02176 | 5.0e-35 | 23 | 215 | 210 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 3.0e-39 | 19 | 217 | 216 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO53311.1 | 0 | 27 | 231 | 2 | 215 | pectin methylesterase [Lupinus angustifolius] |
RefSeq | XP_002277623.1 | 5e-38 | 7 | 217 | 30 | 236 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318946.1 | 1.4013e-45 | 12 | 217 | 11 | 233 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330032.1 | 4.2039e-45 | 12 | 211 | 10 | 212 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529267.1 | 0 | 47 | 253 | 62 | 277 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 3e-17 | 47 | 254 | 31 | 250 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0.00000000000005 | 25 | 253 | 8 | 245 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.00000000007 | 53 | 207 | 35 | 209 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.00000000007 | 53 | 207 | 35 | 209 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.00000000007 | 53 | 207 | 35 | 209 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |