y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.013G129900.1 |
Family | CE8 |
Protein Properties | Length: 251 Molecular Weight: 27470.4 Isoelectric Point: 8.3542 |
Chromosome | Chromosome/Scaffold: 13 Start: 34004710 End: 34006048 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 45 | 208 | 2.29813e-43 |
ENHQWVKVQINPDVYMEKVTIPKQKPCIFLEGQDKNESATFTSMVDNIVAKGITFKNSYNHPLLLKHALIAAKILGDKSAFFKCGFLGLQDTLWDASGRH YFAKCHIEAAADFIFGSGQSIYHACKINVTAGALSSQYPYGYITAQGQGSSDDTSGFVFKGGTL |
Full Sequence |
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Protein Sequence Length: 251 Download |
MQHKVPFLLM LLTLSLRISI ANADECTGNG GSKFGYPIVV DKSGENHQWV KVQINPDVYM 60 EKVTIPKQKP CIFLEGQDKN ESATFTSMVD NIVAKGITFK NSYNHPLLLK HALIAAKILG 120 DKSAFFKCGF LGLQDTLWDA SGRHYFAKCH IEAAADFIFG SGQSIYHACK INVTAGALSS 180 QYPYGYITAQ GQGSSDDTSG FVFKGGTLFG NVHVVPQGWD AWKFPGKEYN FMYAEVNCKG 240 PGFITSNRVT * 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 5.0e-40 | 46 | 249 | 241 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-41 | 46 | 249 | 246 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 4.0e-47 | 46 | 249 | 243 | + Probable pectinesterase | ||
PLN02176 | PLN02176 | 1.0e-51 | 45 | 249 | 244 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 5.0e-65 | 38 | 250 | 270 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN67070.1 | 0 | 17 | 249 | 36 | 307 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277623.1 | 0 | 17 | 249 | 36 | 307 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318946.1 | 0 | 8 | 249 | 9 | 308 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330032.1 | 0 | 1 | 249 | 1 | 293 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529267.1 | 0 | 46 | 249 | 64 | 307 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 6e-16 | 52 | 204 | 39 | 202 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 3uw0_A | 0.00000000005 | 75 | 189 | 105 | 234 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.000000002 | 52 | 189 | 37 | 209 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.000000002 | 52 | 189 | 37 | 209 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntp_B | 0.000000002 | 52 | 189 | 37 | 209 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |