y
Basic Information | |
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Species | Oryza sativa |
Cazyme ID | LOC_Os12g37660.1 |
Family | CE8 |
Protein Properties | Length: 415 Molecular Weight: 44313.5 Isoelectric Point: 9.3855 |
Chromosome | Chromosome/Scaffold: 12 Start: 23118801 End: 23122701 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 108 | 401 | 0 |
YVVSGDGKGKFRTITEAIKAVPEYNKKRVILDIRPGTYKEKLLIPFTKPFITFVGNPRSPPTIMWDDRAATHGKDGQPMGTMLSATVAVEADYFMASSII FKNNAPMAAPGAHGGQAVALRVFGSKVAMYNCTIDGGQDTLYDHKGLHYFKNCLIRGSVDFIFGFGRSLYADCTIESVTKEVAVVTAQQRSKNIAEAIDT GFSFLRCKISGIGQIYLGRAWGDSSRVVYSYTTMGKEVVPIGWDGWEVQKPEHSGIYYGEYKCSGPGALPSKRIGWSLVLSDIQAKPFTGSHFV |
Full Sequence |
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Protein Sequence Length: 415 Download |
MEIISPSSSS NNNSPVLATF LVVLVVLLAS SRPASSQNQQ SFTINPGGAA AARPGGGKGG 60 GGGGGPGSFS DFLTQNVQHY VLSEQKYAGK VKALDAELSA AEAGAARYVV SGDGKGKFRT 120 ITEAIKAVPE YNKKRVILDI RPGTYKEKLL IPFTKPFITF VGNPRSPPTI MWDDRAATHG 180 KDGQPMGTML SATVAVEADY FMASSIIFKN NAPMAAPGAH GGQAVALRVF GSKVAMYNCT 240 IDGGQDTLYD HKGLHYFKNC LIRGSVDFIF GFGRSLYADC TIESVTKEVA VVTAQQRSKN 300 IAEAIDTGFS FLRCKISGIG QIYLGRAWGD SSRVVYSYTT MGKEVVPIGW DGWEVQKPEH 360 SGIYYGEYKC SGPGALPSKR IGWSLVLSDI QAKPFTGSHF VYGDSWILPP PKSM* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 3.0e-84 | 110 | 407 | 298 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 2.0e-92 | 109 | 409 | 301 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 2.0e-94 | 109 | 407 | 302 | + pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-115 | 114 | 409 | 296 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 1.0e-118 | 110 | 412 | 306 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0005737 | cytoplasm |
GO:0008150 | biological_process |
GO:0008152 | metabolic process |
GO:0016787 | hydrolase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ29173.1 | 0 | 171 | 414 | 1 | 235 | hypothetical protein OsJ_13232 [Oryza sativa Japonica Group] |
GenBank | EEC69509.1 | 0 | 1 | 414 | 1 | 415 | hypothetical protein OsI_38743 [Oryza sativa Indica Group] |
RefSeq | NP_001067039.1 | 0 | 1 | 414 | 1 | 414 | Os12g0563700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001144148.1 | 0 | 69 | 412 | 39 | 389 | hypothetical protein LOC100277001 [Zea mays] |
RefSeq | XP_002443368.1 | 0 | 63 | 412 | 73 | 430 | hypothetical protein SORBIDRAFT_08g018360 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 109 | 407 | 10 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-38 | 106 | 407 | 3 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 5e-19 | 111 | 411 | 12 | 342 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 5e-19 | 111 | 411 | 12 | 342 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 5e-19 | 111 | 411 | 12 | 342 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |