y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10034893 |
Family | CE8 |
Protein Properties | Length: 348 Molecular Weight: 38361.4 Isoelectric Point: 7.5754 |
Chromosome | Chromosome/Scaffold: 66 Start: 1512049 End: 1515324 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 49 | 334 | 0 |
AANKPGADFRTVTEAINSIPEGNSRRTVVWIGGGYYWEKITISVRKPFVTLYGDPNDMPTIVFNGTALQYGTVYSATVAVESDYFMAVNVIFQNAAPMPT IQSIGAQAVAMRISGDKAAFYNCHFLGFQDTLCDDRGRHLFMDCYVRGTVDFIFGNGQSLYLNVTLESVAEETGVITAQAREKSNEGSGFCFIHCNIQGS NKDYTTYLGRAWKESPRVIFAYTFMPTLVNPAGWYSGHDPNPRIQGVYYGEYKCKGPGALATGRVRYAKFLNDDEAKPFLSMTFIN |
Full Sequence |
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Protein Sequence Length: 348 Download |
MPHATSHPQL VPSDPTKVAS WVAHHNQGSH DQRLSAAETG EPRLIKVAAA NKPGADFRTV 60 TEAINSIPEG NSRRTVVWIG GGYYWEKITI SVRKPFVTLY GDPNDMPTIV FNGTALQYGT 120 VYSATVAVES DYFMAVNVIF QNAAPMPTIQ SIGAQAVAMR ISGDKAAFYN CHFLGFQDTL 180 CDDRGRHLFM DCYVRGTVDF IFGNGQSLYL NVTLESVAEE TGVITAQARE KSNEGSGFCF 240 IHCNIQGSNK DYTTYLGRAW KESPRVIFAY TFMPTLVNPA GWYSGHDPNP RIQGVYYGEY 300 KCKGPGALAT GRVRYAKFLN DDEAKPFLSM TFINAHKWLL PPPQLTT* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 1.0e-81 | 54 | 339 | 298 | + pectinesterase | ||
PLN02432 | PLN02432 | 6.0e-84 | 44 | 339 | 297 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 7.0e-95 | 56 | 341 | 295 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 7.0e-109 | 20 | 341 | 329 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 4 | 345 | 349 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI27759.1 | 0 | 11 | 344 | 49 | 389 | unnamed protein product [Vitis vinifera] |
EMBL | CBI38548.1 | 0 | 8 | 346 | 32 | 371 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277518.1 | 0 | 11 | 344 | 37 | 377 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002326144.1 | 0 | 1 | 345 | 21 | 374 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516214.1 | 0 | 1 | 345 | 23 | 378 | Pectinesterase-3 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 47 | 339 | 10 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-40 | 56 | 339 | 14 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 4e-18 | 47 | 314 | 8 | 318 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 4e-18 | 47 | 314 | 8 | 318 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 4e-18 | 47 | 314 | 8 | 318 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY263772 | 329 | 10 | 328 | 0 |
DY300112 | 305 | 10 | 305 | 0 |
DY292191 | 323 | 10 | 320 | 0 |
DY300051 | 310 | 10 | 310 | 0 |
DY275544 | 305 | 10 | 305 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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