y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10028364 |
Family | CE8 |
Protein Properties | Length: 316 Molecular Weight: 34945 Isoelectric Point: 9.7069 |
Chromosome | Chromosome/Scaffold: 413 Start: 329902 End: 331760 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 22 | 306 | 0 |
RSRVFSTLRKALESIPVVNNCRVVISIGKGTYREKVEIPTTMAYITLKGAGTGKTVIEWDDTADRIGANGHPLGTFGSSTFAVNSPYFIAKNITFKNNAP PPPSGALGKQAVALRISGDNAAFIGCKFIGAQDTLYDHLGRHYFKHCYIEGSVDFVFGNGLSLYENCHLHAISNTFGALTAQKRESLLEETGFSFVKCKV TGSGALYLGRAWGSFSRVVFAYTYMDKIIKPQGWYDWGDKNREMTVFYGQYKCWGPGANFGGRVPWSRELTDAEAQPFVSLGFID |
Full Sequence |
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Protein Sequence Length: 316 Download |
MNKVRPCLTL KVKKKKHSRP SRSRVFSTLR KALESIPVVN NCRVVISIGK GTYREKVEIP 60 TTMAYITLKG AGTGKTVIEW DDTADRIGAN GHPLGTFGSS TFAVNSPYFI AKNITFKNNA 120 PPPPSGALGK QAVALRISGD NAAFIGCKFI GAQDTLYDHL GRHYFKHCYI EGSVDFVFGN 180 GLSLYENCHL HAISNTFGAL TAQKRESLLE ETGFSFVKCK VTGSGALYLG RAWGSFSRVV 240 FAYTYMDKII KPQGWYDWGD KNREMTVFYG QYKCWGPGAN FGGRVPWSRE LTDAEAQPFV 300 SLGFIDGHEW LHDLL* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 4.0e-110 | 26 | 311 | 294 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 9.0e-113 | 26 | 311 | 286 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 5.0e-117 | 26 | 311 | 287 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 4.0e-117 | 26 | 311 | 288 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 0 | 2 | 311 | 310 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI17409.1 | 0 | 2 | 314 | 57 | 364 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266952.1 | 0 | 2 | 314 | 55 | 362 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002310842.1 | 0 | 2 | 311 | 33 | 336 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330522.1 | 0 | 2 | 311 | 75 | 379 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002531506.1 | 0 | 2 | 311 | 60 | 364 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 26 | 311 | 19 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1.00053e-42 | 26 | 312 | 15 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 6e-29 | 26 | 300 | 44 | 357 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 2e-23 | 21 | 300 | 13 | 329 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 2e-23 | 21 | 300 | 13 | 329 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG062516 | 254 | 63 | 316 | 0 |
DT759916 | 269 | 43 | 311 | 0 |
DT570570 | 259 | 2 | 260 | 0 |
DT748463 | 243 | 69 | 311 | 0 |
EH701256 | 260 | 31 | 290 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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