y
Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g046043m |
Family | CE8 |
Protein Properties | Length: 317 Molecular Weight: 35667.2 Isoelectric Point: 9.1419 |
Chromosome | Chromosome/Scaffold: 00016 Start: 1025049 End: 1026736 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 23 | 307 | 0 |
KVDINGDGDFKSIQDAINAVPKGNPNWIIIHVRKGVYREKVYIPEDKPYIFMRGNGKGKTAIVWSQSATNNKDSATFSVEAPHFIAFGISFKNEAPTGVA FTSQNQSVAAFVGADMNAFYHCAFYSTHNTLFDYKGRHYYHNCYIQGSIDFIFGRGRSIFQNCEIFVIDDKRVKIHGSITAQNREDNTDNSGFVFIEGKV YGTGDVYLGRAKGAYSRVVFAKTYLSRTIVPHGWTNWSYVGSTDNLFQAEYRCHGPGAEAKHRVPWSKQLSDQEAEKFMSIDFVD |
Full Sequence |
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Protein Sequence Length: 317 Download |
LTKKTVFDAP LLTEKLNTNR TIKVDINGDG DFKSIQDAIN AVPKGNPNWI IIHVRKGVYR 60 EKVYIPEDKP YIFMRGNGKG KTAIVWSQSA TNNKDSATFS VEAPHFIAFG ISFKNEAPTG 120 VAFTSQNQSV AAFVGADMNA FYHCAFYSTH NTLFDYKGRH YYHNCYIQGS IDFIFGRGRS 180 IFQNCEIFVI DDKRVKIHGS ITAQNREDNT DNSGFVFIEG KVYGTGDVYL GRAKGAYSRV 240 VFAKTYLSRT IVPHGWTNWS YVGSTDNLFQ AEYRCHGPGA EAKHRVPWSK QLSDQEAEKF 300 MSIDFVDGKN WLPAWV* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 5.0e-89 | 20 | 312 | 296 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 9.0e-93 | 16 | 312 | 297 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 1.0e-96 | 20 | 312 | 296 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-100 | 3 | 313 | 321 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 0 | 1 | 315 | 315 | + Probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU23222.1 | 0 | 1 | 316 | 31 | 346 | unknown [Glycine max] |
RefSeq | NP_188331.1 | 0 | 3 | 316 | 27 | 340 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002272939.1 | 0 | 5 | 316 | 37 | 348 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311381.1 | 0 | 1 | 315 | 28 | 341 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523016.1 | 0 | 1 | 316 | 36 | 350 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 22 | 314 | 9 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4e-37 | 27 | 312 | 10 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.00000000000001 | 32 | 313 | 18 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.00000000000001 | 32 | 313 | 18 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.00000000000001 | 32 | 313 | 18 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CO115605 | 265 | 5 | 269 | 0 |
GR458872 | 284 | 25 | 308 | 0 |
ES902377 | 275 | 39 | 313 | 0 |
DY022435 | 264 | 18 | 281 | 0 |
CO124627 | 243 | 5 | 247 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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