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Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa006130m |
Family | GH28 |
Protein Properties | Length: 427 Molecular Weight: 46270.1 Isoelectric Point: 5.8671 |
Chromosome | Chromosome/Scaffold: 8 Start: 21482868 End: 21485119 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 42 | 388 | 0 |
DKGGAQLYVPPGSWLTGSFNLTSHLTLFLEAGAIILGSQDYAHWDIVKPLPSYGRGIDLPGWRYRSLINGHNLSDVVITGDNGTIDGQGSVWWEQFSSHA LNYSRPHLVEFTGCDNVTISNLTLLNSPAWNIHPAYCRYVQVLNITVHASPASPYTSGIVPDSSENVCIENCNISMSHDAIVLKSGWDEYGIAYGKPTKN VHIRGVNLQSSLGAGLAFGSEMSGGISNILVEQLHLRNSFIGIALKTTRGRGGYMKDIIISNVEMENIHLAMEATGQSGSHPDENFDPDELPFVKGVTFE NMVGTNITFAGNFSGLDKSPFTSICLSNISFSITWNSSTSWFCSNVM |
Full Sequence |
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Protein Sequence Length: 427 Download |
MKSLDPRPHS VSLLEFGAVG DGKTLNTVAF QNAIFYVKSF ADKGGAQLYV PPGSWLTGSF 60 NLTSHLTLFL EAGAIILGSQ DYAHWDIVKP LPSYGRGIDL PGWRYRSLIN GHNLSDVVIT 120 GDNGTIDGQG SVWWEQFSSH ALNYSRPHLV EFTGCDNVTI SNLTLLNSPA WNIHPAYCRY 180 VQVLNITVHA SPASPYTSGI VPDSSENVCI ENCNISMSHD AIVLKSGWDE YGIAYGKPTK 240 NVHIRGVNLQ SSLGAGLAFG SEMSGGISNI LVEQLHLRNS FIGIALKTTR GRGGYMKDII 300 ISNVEMENIH LAMEATGQSG SHPDENFDPD ELPFVKGVTF ENMVGTNITF AGNFSGLDKS 360 PFTSICLSNI SFSITWNSST SWFCSNVMGF SKEVSPKPCS NLQDSTFNSS AACFFSLYPV 420 NYATVL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-22 | 7 | 399 | 421 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-23 | 8 | 371 | 383 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 5.0e-25 | 109 | 399 | 308 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 5.0e-30 | 9 | 410 | 420 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 1.0e-55 | 11 | 426 | 457 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 3 | 399 | 31 | 427 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36899.1 | 0 | 2 | 426 | 53 | 477 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002269037.1 | 0 | 2 | 426 | 118 | 542 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 3 | 399 | 33 | 429 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 4 | 408 | 32 | 435 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 7e-40 | 9 | 369 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 7e-40 | 9 | 369 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 7e-40 | 9 | 369 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 7e-40 | 9 | 369 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 0.000000000000003 | 7 | 409 | 153 | 579 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO797483 | 413 | 3 | 415 | 0 |
HO797919 | 380 | 4 | 383 | 0 |
HO780931 | 322 | 35 | 354 | 0 |
HO780931 | 59 | 352 | 410 | 0.00000009 |
HO780931 | 22 | 14 | 35 | 0.0001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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