y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10038030 |
Family | GH28 |
Protein Properties | Length: 471 Molecular Weight: 51476 Isoelectric Point: 5.2643 |
Chromosome | Chromosome/Scaffold: 475 Start: 937571 End: 939564 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 75 | 420 | 0 |
ADKGGAKLYVPSGRWLTGSFDLISHLTIWLDEDAVILGSKDSGDWPVVEPLPSYGRGRELPGKRYRSLIYGSNLTDVIITGNNGTIDGQGDVWWNWFHNK TLNYTRPHLVELINSTDVIISNLTFQNSPFWTIHPVYCSQVIVQNVTILAPLDSPNTDGVDPDSSDDVCIEDCYISTGDDLIAIKSGWGGYGTSFGRPSK NITIIRLVGRSRSSAGIAIGSEMSGGVSEVYAQDLRFFGTNSAIRIKTSPGRGGYVRNIHISNITLTDVNVTIRLTGQYGEHPDESYDPSALPSIEKITI ENVSGVNITHAGVLEGIEGDPFLDICLLNITLMGVASKPAWECTHI |
Full Sequence |
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Protein Sequence Length: 471 Download |
MEKQVKEEQQ EGVLLVLALL FSSAVNGGSP YCRRAIPDVI RPHSVTITEF GAVGDGVTLN 60 TKAFQNAIFY LNSFADKGGA KLYVPSGRWL TGSFDLISHL TIWLDEDAVI LGSKDSGDWP 120 VVEPLPSYGR GRELPGKRYR SLIYGSNLTD VIITGNNGTI DGQGDVWWNW FHNKTLNYTR 180 PHLVELINST DVIISNLTFQ NSPFWTIHPV YCSQVIVQNV TILAPLDSPN TDGVDPDSSD 240 DVCIEDCYIS TGDDLIAIKS GWGGYGTSFG RPSKNITIIR LVGRSRSSAG IAIGSEMSGG 300 VSEVYAQDLR FFGTNSAIRI KTSPGRGGYV RNIHISNITL TDVNVTIRLT GQYGEHPDES 360 YDPSALPSIE KITIENVSGV NITHAGVLEG IEGDPFLDIC LLNITLMGVA SKPAWECTHI 420 AGYSDKVTPK TCKLLREEIF PDHSSDCYHV SSQMQNSSSL SRGKKQWFSW * 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-25 | 43 | 406 | 389 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 5.0e-28 | 42 | 408 | 384 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 3.0e-29 | 43 | 429 | 404 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 4.0e-34 | 143 | 420 | 288 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 4.0e-63 | 45 | 346 | 325 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37055.1 | 0 | 28 | 470 | 26 | 466 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273855.1 | 0 | 28 | 470 | 77 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301554.1 | 0 | 32 | 460 | 30 | 456 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320934.1 | 0 | 13 | 437 | 3 | 426 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002535132.1 | 0 | 28 | 463 | 36 | 470 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 36 | 408 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 36 | 408 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 36 | 408 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 36 | 408 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-19 | 89 | 420 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |