y
Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_038_00086.1 |
Family | GH28 |
Protein Properties | Length: 487 Molecular Weight: 53142.1 Isoelectric Point: 6.835 |
Chromosome | Chromosome/Scaffold: 38 Start: 1070695 End: 1074466 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 94 | 441 | 0 |
GSQLFVPPGQWLTGSFNLTSHFTLFLHKDAVLLASQEESEWPVIAPLPSYGRGRDAAGGRYISLIFGTNLTDVIVTGDNATIDGQGALWWQKFKKGKLKY TRPYLIEIMYSDQVQISNLTFLNSPSWNVHPVYSSNVIIKGVTILAPIVPISPNTDGINPDSCTNVLIEDCYIVSGDDCVAVKSGWDEYGISFAMPTQHL VIRRLTCISPDSAVIALGSEMSGGIQDVRAEDILAINSESGIRIKTAVGRGGFVKDIFVRRMTMKTMKWAFWMTGNYGSHADNKYDPNALPVIQGISYTD MVADNVTMAARLEGIDGDPFTGICISNVTIGMARKAKKVPWTCTNISG |
Full Sequence |
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Protein Sequence Length: 487 Download |
MEFCRKNSKL QVMKLLLLVV VLVGLISFEG VECRKKGKKK VKVLDEYIEY SAMSCRAHVA 60 SLTDFGGVGD GITSNTNAFK AAIEHLGQFS YDGGSQLFVP PGQWLTGSFN LTSHFTLFLH 120 KDAVLLASQE ESEWPVIAPL PSYGRGRDAA GGRYISLIFG TNLTDVIVTG DNATIDGQGA 180 LWWQKFKKGK LKYTRPYLIE IMYSDQVQIS NLTFLNSPSW NVHPVYSSNV IIKGVTILAP 240 IVPISPNTDG INPDSCTNVL IEDCYIVSGD DCVAVKSGWD EYGISFAMPT QHLVIRRLTC 300 ISPDSAVIAL GSEMSGGIQD VRAEDILAIN SESGIRIKTA VGRGGFVKDI FVRRMTMKTM 360 KWAFWMTGNY GSHADNKYDP NALPVIQGIS YTDMVADNVT MAARLEGIDG DPFTGICISN 420 VTIGMARKAK KVPWTCTNIS GITTGVSPKP CDSLPEQEVT SCPYPTDSLA IENVEQKLCS 480 FRANYK* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-13 | 64 | 358 | 311 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-22 | 61 | 449 | 403 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 1.0e-22 | 62 | 448 | 407 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 3.0e-28 | 164 | 451 | 299 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-52 | 59 | 358 | 322 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A7PZL3 | 0 | 32 | 485 | 41 | 489 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
RefSeq | XP_002278930.1 | 0 | 46 | 485 | 39 | 479 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301370.1 | 0 | 25 | 485 | 14 | 469 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 30 | 485 | 29 | 479 | polygalacturonase, putative [Ricinus communis] |
RefSeq | XP_002511903.1 | 0 | 16 | 485 | 16 | 471 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 60 | 427 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 60 | 427 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 60 | 427 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 60 | 427 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000003 | 104 | 360 | 52 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |