y
Basic Information | |
---|---|
Species | Malus domestica |
Cazyme ID | MDP0000254231 |
Family | GH28 |
Protein Properties | Length: 474 Molecular Weight: 51485.5 Isoelectric Point: 5.9693 |
Chromosome | Chromosome/Scaffold: 021669191 Start: 1498 End: 4276 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 76 | 425 | 0 |
ASDGGAQLIVPPGRWLTGSFNLTSHFTLFLHKDAVILATQDESEWPHLPALPSYGKGRDGPGERFSSLIFGTNLTDVVITGHNGTIDGQGASWWAKFKQG LLNSTRPYVIELMYSDQIQISNLTLVNSPSWFVHPIYSSNITIQGLTILAPIEVPNTDGINPDSCSQIRIEDCYIVSGDDCIAVKSGFDEYGIKVGIPTE HLVIRRLTCISPSSATIALGSEMSGGIRDVRAEDITAIDTESSVRIKTAVGRGGYVKDIYVRRMTLKTMKYVFWMTGSYGSHPDPGFDPKALPEITNINY KQVVAENVTISARLDGIHDDPFKGICISNVTITLAEKAKKLQWNCTDVEG |
Full Sequence |
---|
Protein Sequence Length: 474 Download |
MVPSKFHVAS AIIAVLGLLF LTAAECRKPI SNTVKYSAIN CRKHSALLTD FGAVGDGETS 60 NTKAFKAAVG HLSQLASDGG AQLIVPPGRW LTGSFNLTSH FTLFLHKDAV ILATQDESEW 120 PHLPALPSYG KGRDGPGERF SSLIFGTNLT DVVITGHNGT IDGQGASWWA KFKQGLLNST 180 RPYVIELMYS DQIQISNLTL VNSPSWFVHP IYSSNITIQG LTILAPIEVP NTDGINPDSC 240 SQIRIEDCYI VSGDDCIAVK SGFDEYGIKV GIPTEHLVIR RLTCISPSSA TIALGSEMSG 300 GIRDVRAEDI TAIDTESSVR IKTAVGRGGY VKDIYVRRMT LKTMKYVFWM TGSYGSHPDP 360 GFDPKALPEI TNINYKQVVA ENVTISARLD GIHDDPFKGI CISNVTITLA EKAKKLQWNC 420 TDVEGITSNX TPKACDLLPE QKEAVDCAFP EDRLAIEDVE LVTCSASTPF FRVC 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 3.0e-19 | 42 | 323 | 292 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 4.0e-21 | 48 | 407 | 373 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 2.0e-25 | 48 | 345 | 309 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 5.0e-27 | 134 | 435 | 314 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-55 | 48 | 342 | 318 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU17976.1 | 0 | 13 | 471 | 19 | 477 | unknown [Glycine max] |
RefSeq | XP_002273143.1 | 0 | 12 | 465 | 4 | 457 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002327490.1 | 0 | 11 | 468 | 3 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 27 | 471 | 34 | 480 | polygalacturonase, putative [Ricinus communis] |
RefSeq | XP_002513653.1 | 0 | 12 | 468 | 18 | 473 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 23 | 429 | 7 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 23 | 429 | 7 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 23 | 429 | 7 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 23 | 429 | 7 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000003 | 90 | 381 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |