y
Basic Information | |
---|---|
Species | Linum usitatissimum |
Cazyme ID | Lus10003589 |
Family | GH28 |
Protein Properties | Length: 481 Molecular Weight: 52243.6 Isoelectric Point: 7.0653 |
Chromosome | Chromosome/Scaffold: 483 Start: 2179 End: 5348 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 112 | 453 | 0 |
SDGGSQLNVPEGRWLTGSFNLTSNFTLFLEAGAVILGSQDPTEWPIIKPLPSYGRGRERLGGRHISLIHGDGLFDVVITGQNGTIDGQGKMWWDLWWNRT LEHTRGHLVELMNSRNILISNLTLHNSPFWTVHPVYCSNVVIRNMTILAPLNAPNTDGIDPDSSRNVCIEDCYIESGDDLVAVKSGWDHYGIKMARPSSN IIIRRISGTTPTCSGIGIGSEMSGGISNVTIEDLHVWNSAAGVRMKTDIGRGGYIANITIRNVIMEGVKIPIKFSRGSNDHPDEGWDRNAIPTVKGIVIS NVVSLNAVKAPQLLGIENAPFSGICLRNVTLLGLKKSGSWHC |
Full Sequence |
---|
Protein Sequence Length: 481 Download |
MMTEEKQGFG ATILNAMKLS RSSLLLLATV AALLCFQITT RTVYPIWIAR NRGSFESDIP 60 PDAGGSCSGF YGKIPARKTV MSIKDFGGIG DGETSNTKAF QEAIRHMERF GSDGGSQLNV 120 PEGRWLTGSF NLTSNFTLFL EAGAVILGSQ DPTEWPIIKP LPSYGRGRER LGGRHISLIH 180 GDGLFDVVIT GQNGTIDGQG KMWWDLWWNR TLEHTRGHLV ELMNSRNILI SNLTLHNSPF 240 WTVHPVYCSN VVIRNMTILA PLNAPNTDGI DPDSSRNVCI EDCYIESGDD LVAVKSGWDH 300 YGIKMARPSS NIIIRRISGT TPTCSGIGIG SEMSGGISNV TIEDLHVWNS AAGVRMKTDI 360 GRGGYIANIT IRNVIMEGVK IPIKFSRGSN DHPDEGWDRN AIPTVKGIVI SNVVSLNAVK 420 APQLLGIENA PFSGICLRNV TLLGLKKSGS WHCEFLSGFA QDVFPLPCPE LQKDDASGCP 480 * 540 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-19 | 38 | 468 | 449 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-21 | 68 | 474 | 421 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 6.0e-26 | 79 | 448 | 390 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-26 | 194 | 454 | 263 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-54 | 78 | 440 | 404 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN76963.1 | 0 | 41 | 477 | 29 | 462 | hypothetical protein [Vitis vinifera] |
EMBL | CBI37530.1 | 0 | 2 | 477 | 1 | 473 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002274138.1 | 0 | 2 | 477 | 1 | 473 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002310517.1 | 0 | 56 | 477 | 10 | 431 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526639.1 | 0 | 41 | 477 | 36 | 474 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 5.04467e-44 | 73 | 448 | 22 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 5.04467e-44 | 73 | 448 | 22 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 5.04467e-44 | 73 | 448 | 22 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 5.04467e-44 | 73 | 448 | 22 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 6e-20 | 194 | 442 | 117 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |