y
Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.K00562.1 |
Family | GH28 |
Protein Properties | Length: 469 Molecular Weight: 51981.8 Isoelectric Point: 6.3003 |
Chromosome | Chromosome/Scaffold: 11 Start: 6264541 End: 6269337 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 73 | 418 | 0 |
ADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKGAVILGSTNTEDWPIVDPLPSYGRGRELPGRRHRSLIFGRNLTDVVITGENGTIDGQGSMWWERFRNK TLDYTRPHLVELMNSTGVVISNLTFLNSPFWTIHPVYCSHVIVQNVTIRAPLDSPNTDGIDPDSSDDVCIEDCYISTGDDVIAIKSGWDEYGTSYGRPSK NIVIRRLIGETHSSGIAIGSEMSGGVSDVHAEDIVFFNSTTGIRIKTSPGRGGYVRNIFISNVSLANVKVAIRFTGRYGEHPDESYDPKALPKIERITFK DIHGENITVAGLMEGIEGDNFINICLYNITLSVNSISPWNCSNVQG |
Full Sequence |
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Protein Sequence Length: 469 Download |
MRSHFILVDV LVLLALLGPT QWGAMGSSHC KRHNDERIRP HSVTITEFGA VGDGVTLNTK 60 AFQNAIFYLN SFADKGGAKL FVPAGRWLTG SFDLISHLTL WLDKGAVILG STNTEDWPIV 120 DPLPSYGRGR ELPGRRHRSL IFGRNLTDVV ITGENGTIDG QGSMWWERFR NKTLDYTRPH 180 LVELMNSTGV VISNLTFLNS PFWTIHPVYC SHVIVQNVTI RAPLDSPNTD GIDPDSSDDV 240 CIEDCYISTG DDVIAIKSGW DEYGTSYGRP SKNIVIRRLI GETHSSGIAI GSEMSGGVSD 300 VHAEDIVFFN STTGIRIKTS PGRGGYVRNI FISNVSLANV KVAIRFTGRY GEHPDESYDP 360 KALPKIERIT FKDIHGENIT VAGLMEGIEG DNFINICLYN ITLSVNSISP WNCSNVQGFS 420 SLVFPQTCEL LEESIFPDHC TECYHLLQEH RIRNKGARLL SWWTYLGT* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 9.0e-30 | 23 | 428 | 429 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 1.0e-30 | 40 | 380 | 350 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 1.0e-33 | 41 | 425 | 404 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 5.0e-35 | 141 | 376 | 242 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-70 | 43 | 361 | 342 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37055.1 | 0 | 1 | 462 | 1 | 466 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273855.1 | 0 | 22 | 462 | 73 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301554.1 | 0 | 1 | 444 | 1 | 444 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320934.1 | 0 | 8 | 434 | 1 | 427 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002535132.1 | 0 | 22 | 462 | 32 | 476 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 37 | 409 | 22 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 37 | 409 | 22 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 37 | 409 | 22 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 37 | 409 | 22 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 6e-26 | 87 | 417 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |