y
Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_007008m |
Family | GH28 |
Protein Properties | Length: 469 Molecular Weight: 51253.9 Isoelectric Point: 4.7333 |
Chromosome | Chromosome/Scaffold: 05280 Start: 562949 End: 565319 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 71 | 419 | 0 |
SSNGGSQLYVPPGRWLTGSFNLTSHFTLYLDEDAVLLASQDESEWPVIEPLPSYGRGRDAEGGRYSSLIFGTNLTDVVITGANATIDGQGDLWWKKFHNG ELNYTRPYLIEIMYSSNIQISNLTLMNSPSWNVHPVYSSNVIAQGLTILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAFGMPTK QLMIRRLTCISPFSAAIALGSEMSGGIQDVRAEDITAIDTESGVRIKTSVGRGGFVKDIYVRRMTMKTMKWVFWMTGNYGSHPDNNYDPNAIPEIKNINY RDMVAENVTMAARLEGIAGDPFTGICISNVTIGLTKKPKKLQWNCTEIA |
Full Sequence |
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Protein Sequence Length: 469 Download |
MDACFVIGLL LFLCTNGVDS RKHPKLECYE YPSISCRSHE ASLADFGGVG DGETSNTKVF 60 QAAIDHLSQF SSNGGSQLYV PPGRWLTGSF NLTSHFTLYL DEDAVLLASQ DESEWPVIEP 120 LPSYGRGRDA EGGRYSSLIF GTNLTDVVIT GANATIDGQG DLWWKKFHNG ELNYTRPYLI 180 EIMYSSNIQI SNLTLMNSPS WNVHPVYSSN VIAQGLTILA PVTSPNTDGI NPDSCTNTRI 240 EDCYIVSGDD CVAVKSGWDE YGIAFGMPTK QLMIRRLTCI SPFSAAIALG SEMSGGIQDV 300 RAEDITAIDT ESGVRIKTSV GRGGFVKDIY VRRMTMKTMK WVFWMTGNYG SHPDNNYDPN 360 AIPEIKNINY RDMVAENVTM AARLEGIAGD PFTGICISNV TIGLTKKPKK LQWNCTEIAG 420 ISSDVTPKPC DLLPNQGQGG IASCNFPEDS LPIENIEVKM CSSSRKNW* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-19 | 6 | 430 | 450 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-22 | 38 | 340 | 314 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-23 | 42 | 402 | 380 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-27 | 139 | 412 | 281 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-59 | 40 | 337 | 321 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002278930.1 | 0 | 15 | 462 | 27 | 474 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299511.1 | 0 | 1 | 467 | 13 | 479 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301370.1 | 0 | 12 | 462 | 14 | 464 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002303605.1 | 0 | 9 | 463 | 12 | 466 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 15 | 466 | 27 | 478 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 32 | 402 | 21 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 32 | 402 | 21 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 32 | 402 | 21 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 32 | 402 | 21 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-17 | 57 | 376 | 26 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |