y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.006G077400.1 |
Family | GH28 |
Protein Properties | Length: 453 Molecular Weight: 49707.2 Isoelectric Point: 4.8274 |
Chromosome | Chromosome/Scaffold: 06 Start: 30177914 End: 30181264 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 70 | 416 | 0 |
DKGGAQLYVPPGRWLTGSFNLTSHLTLFLEKDAIILGSQDPSHWGIVEPLPSYGRGIELPGRRYRSLVNGYMLRDVVITGDNGTIDGQGSVWWEWFTSHS LNYTRPHLVEFVSSEYVLVSNISLLNAPAYNIHPVYCSNVHIHNISVYAPPESPYTVGIVPDSSDNICIEDCNISMGHDAIAFKSGWDEYGIAYGRPTTI AHVRRVDLRSSTGSSLAFGSEMSGGISDILVEEVHLYDSLTGIEFRTTIGRGGYIKEIMISDVDLLNVNTSFAAIGDYGSHPDDKFDPDAFPVLEKITLQ NIIGTNITIAGNFKGIEESPFTFICLSNISLSINSTSLSPWQCSYVS |
Full Sequence |
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Protein Sequence Length: 453 Download |
MAVALLLLWA LCNAIRVNGE ESNGRCDHKL KFNPRPHSVS IQEFGAIGDG KTLNTIAFRN 60 AIFYLKSFAD KGGAQLYVPP GRWLTGSFNL TSHLTLFLEK DAIILGSQDP SHWGIVEPLP 120 SYGRGIELPG RRYRSLVNGY MLRDVVITGD NGTIDGQGSV WWEWFTSHSL NYTRPHLVEF 180 VSSEYVLVSN ISLLNAPAYN IHPVYCSNVH IHNISVYAPP ESPYTVGIVP DSSDNICIED 240 CNISMGHDAI AFKSGWDEYG IAYGRPTTIA HVRRVDLRSS TGSSLAFGSE MSGGISDILV 300 EEVHLYDSLT GIEFRTTIGR GGYIKEIMIS DVDLLNVNTS FAAIGDYGSH PDDKFDPDAF 360 PVLEKITLQN IIGTNITIAG NFKGIEESPF TFICLSNISL SINSTSLSPW QCSYVSGFSE 420 SVFPEPCPEL MNSSTSSCGI LMLELQFYNI IL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 8.0e-14 | 5 | 338 | 349 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 4.0e-19 | 37 | 337 | 311 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 3.0e-19 | 144 | 337 | 199 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 8.0e-23 | 36 | 347 | 332 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 8.0e-44 | 39 | 351 | 339 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 13 | 428 | 13 | 428 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 13 | 428 | 15 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 14 | 437 | 14 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 14 | 434 | 16 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516982.1 | 0 | 1 | 443 | 1 | 444 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2e-32 | 37 | 397 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-32 | 37 | 397 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-32 | 37 | 397 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-32 | 37 | 397 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 0.0000000000001 | 31 | 425 | 149 | 584 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |