y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.014G112100.1 |
Family | GH28 |
Protein Properties | Length: 470 Molecular Weight: 51529.9 Isoelectric Point: 4.6089 |
Chromosome | Chromosome/Scaffold: 14 Start: 8778918 End: 8783369 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 73 | 416 | 0 |
ADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAIILGSTNSDDWPVIDSLPSYGRGRELPGRRHKSLIYGRNLTDVIITGDNGTIDGQGSIWWNWFRNE TLDYTRPHLVELMNTTGVVISNLTFLNSPFWTIHPVYCSQVIVQNVTILAPLDSPNTDGIDPDSSDDVCIEDCYISTGDDIIAIKSGWDEYGTSYARPSK NITIRGLVGQTTSAGIAIGSEMSGGVSEVHAENLTFYNSTTGIRIKTAPGRGGYVRNIYISNMSLTDVKTAIRFTGQYGDHPDESYDPKALPLIERITID DVTGQNVKYAGLLEGLEGDTFLDICLSNINLSVTSKSPWNCSYI |
Full Sequence |
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Protein Sequence Length: 470 Download |
MRRSFTLVDV LLLLALFIDA PWAIRGNSHC QWGNPAVIRP HSVAITEFGA VGDGVTLNTK 60 AFQNAIFYLN SFADKGGAKL FVPAGQWLTG SFDLISHLTL WLDKDAIILG STNSDDWPVI 120 DSLPSYGRGR ELPGRRHKSL IYGRNLTDVI ITGDNGTIDG QGSIWWNWFR NETLDYTRPH 180 LVELMNTTGV VISNLTFLNS PFWTIHPVYC SQVIVQNVTI LAPLDSPNTD GIDPDSSDDV 240 CIEDCYISTG DDIIAIKSGW DEYGTSYARP SKNITIRGLV GQTTSAGIAI GSEMSGGVSE 300 VHAENLTFYN STTGIRIKTA PGRGGYVRNI YISNMSLTDV KTAIRFTGQY GDHPDESYDP 360 KALPLIERIT IDDVTGQNVK YAGLLEGLEG DTFLDICLSN INLSVTSKSP WNCSYIQGYS 420 EAVSPEICEP LRETIIPDHY SGCYYPSHHL QSSSNETEVL DCLGKFMVA* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-27 | 40 | 376 | 345 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 1.0e-28 | 45 | 420 | 387 | + polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-31 | 41 | 362 | 333 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 4.0e-34 | 147 | 416 | 276 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 8.0e-67 | 43 | 346 | 327 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37055.1 | 0 | 1 | 458 | 1 | 459 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273855.1 | 0 | 17 | 458 | 68 | 510 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301554.1 | 0 | 1 | 455 | 1 | 455 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320934.1 | 0 | 8 | 434 | 1 | 427 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002535132.1 | 0 | 4 | 458 | 14 | 469 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 41 | 400 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 41 | 400 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 41 | 400 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 41 | 400 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 2e-23 | 39 | 378 | 153 | 536 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |