y
Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.007G217500.1 |
Family | GH28 |
Protein Properties | Length: 454 Molecular Weight: 48427.4 Isoelectric Point: 6.0964 |
Chromosome | Chromosome/Scaffold: 07 Start: 45647847 End: 45651717 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 68 | 415 | 0 |
ADKGGAQLYVPSGRWLTGSFNLTSHLTLFLERGATIIASQDYAHWPAVDPLPSYGRGIDVPGGRYCSLIYGRNLSDVVITGDNGIIDGQGSVWWDLIRTH SLNYSRPHIIELVGSDNIVISNLTFLNSPAWSIHPVYCSNVRIQNITAHAPTEFPYTSGIVPDSSDHVCIDNSNISTGHDAIVLKSGWDQYGVAYGKSTS NVHIRGVHLQSSSGAGLAFGSEMSGGISGIIAEDLHIINSTIGIELKTTRGRGGYMRNILISDTKLENIYLGIGMTGFSGSHPDDKYDPNAVPVVGNITF ENVIGANVAIAGNFSGIVDSPFTPIFLSNVTFSTGSESSSSWFCSNVM |
Full Sequence |
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Protein Sequence Length: 454 Download |
MKRLVTVLLL IVLSTALGGK DDHGPCKQEV LNPRPHSVSI LEFGAVGDGK TLNTVAFQNA 60 VFYVKSFADK GGAQLYVPSG RWLTGSFNLT SHLTLFLERG ATIIASQDYA HWPAVDPLPS 120 YGRGIDVPGG RYCSLIYGRN LSDVVITGDN GIIDGQGSVW WDLIRTHSLN YSRPHIIELV 180 GSDNIVISNL TFLNSPAWSI HPVYCSNVRI QNITAHAPTE FPYTSGIVPD SSDHVCIDNS 240 NISTGHDAIV LKSGWDQYGV AYGKSTSNVH IRGVHLQSSS GAGLAFGSEM SGGISGIIAE 300 DLHIINSTIG IELKTTRGRG GYMRNILISD TKLENIYLGI GMTGFSGSHP DDKYDPNAVP 360 VVGNITFENV IGANVAIAGN FSGIVDSPFT PIFLSNVTFS TGSESSSSWF CSNVMGVSQD 420 VFPEPCPNLL NTQSNFSSSF SSLHPSSSYV SSA* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-13 | 34 | 426 | 433 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-19 | 35 | 336 | 320 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-20 | 142 | 372 | 237 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 6.0e-21 | 36 | 394 | 371 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 4.0e-48 | 38 | 336 | 322 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 19 | 427 | 19 | 428 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36899.1 | 0 | 19 | 443 | 42 | 467 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002269037.1 | 0 | 19 | 443 | 107 | 532 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 19 | 427 | 21 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002516982.1 | 0 | 19 | 453 | 19 | 452 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 3e-37 | 27 | 396 | 11 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 3e-37 | 27 | 396 | 11 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 3e-37 | 27 | 396 | 11 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 3e-37 | 27 | 396 | 11 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-16 | 82 | 414 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |