y
Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_29.51 |
Family | GH28 |
Protein Properties | Length: 482 Molecular Weight: 52375.2 Isoelectric Point: 8.148 |
Chromosome | Chromosome/Scaffold: 29 Start: 424479 End: 426476 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 87 | 437 | 0 |
SSSGGSQLFIPPGKWLTGSFNLTSHFTLFLHRDATILAVQDEKEWPVIKPLPSYGRGRDSPGGRYISLIFGTNLTDVVITGDNGTIDGQGAPWWDKFPKG ELKFTRPYLIEILFSNNVQISNLVLTNSPSWHVHPVYCSNVLVTGLTILAPVTVPNTDGVNPDSCTNTLIQDCYIVSGDDCIAIKSGWDQYGIKVGMPTK QLVVRRLTCISPDSAVIALGSEMSGGIEDVRVEDVVAIDSQSGVRIKTGVGRGGYVKDIFVRRMIMKTMKFVFWITGNYGSHPDNNFDPKALPVIKNINY RDMVAENVTMAAQFQGIEGDVFTGICISNVTIGLSDDPKKIQWNCTDVAGT |
Full Sequence |
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Protein Sequence Length: 482 Download |
MTANHSSASM EIRKKVVYNV FVFGVLLFVL CGNGAEGKIM VNEKSMYSAI NCRAHSAVLT 60 DFGAVGDGKT LNTKAFQAAI ANLSKFSSSG GSQLFIPPGK WLTGSFNLTS HFTLFLHRDA 120 TILAVQDEKE WPVIKPLPSY GRGRDSPGGR YISLIFGTNL TDVVITGDNG TIDGQGAPWW 180 DKFPKGELKF TRPYLIEILF SNNVQISNLV LTNSPSWHVH PVYCSNVLVT GLTILAPVTV 240 PNTDGVNPDS CTNTLIQDCY IVSGDDCIAI KSGWDQYGIK VGMPTKQLVV RRLTCISPDS 300 AVIALGSEMS GGIEDVRVED VVAIDSQSGV RIKTGVGRGG YVKDIFVRRM IMKTMKFVFW 360 ITGNYGSHPD NNFDPKALPV IKNINYRDMV AENVTMAAQF QGIEGDVFTG ICISNVTIGL 420 SDDPKKIQWN CTDVAGTTSK VTPPACKQLS DKNPNKLASC KFPENKLPIE SIKLQSCSLQ 480 Y* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-20 | 62 | 334 | 279 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 4.0e-23 | 53 | 418 | 380 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-28 | 155 | 434 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 1.0e-29 | 59 | 464 | 423 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 4.0e-57 | 41 | 353 | 345 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91278.1 | 0 | 43 | 477 | 53 | 487 | glycoside hydrolase family 28 protein [Capsella rubella] |
RefSeq | XP_002278930.1 | 0 | 33 | 478 | 28 | 474 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299511.1 | 0 | 13 | 479 | 9 | 475 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002303605.1 | 0 | 26 | 478 | 12 | 465 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 47 | 478 | 43 | 474 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 59 | 418 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 59 | 418 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 59 | 418 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 59 | 418 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-16 | 88 | 392 | 45 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |