y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra039462 |
Family | GH28 |
Protein Properties | Length: 503 Molecular Weight: 55674.2 Isoelectric Point: 8.2616 |
Chromosome | Chromosome/Scaffold: 05 Start: 23453196 End: 23455621 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 115 | 464 | 0 |
KKGGGQLNVPPGRWLTAPFNLTSFMTLFLAEDAEILAVQDETLWPLLPPLPSYGYGREHYGPRYGSFIHGQNLKDVVVTGNNGSINGQGVYWWKKYRSKL LNHTRGPLVQIMWSSDVVFANITLRDSPFWTLHPYDCKNVTITNMTILAPVFEAPNTDGIDPDSCEDMLIENSYISVGDDGIAIKSGWDQYGTNYGRPSK NILIRNLIIRSMVSAGISIGSEMSGGVSNITVENILIWSSRRGVRIKTAPGRGGYVRDITFRNVTLDELRVGIVVKTDYNEHPDGGFNPQAFPVLENINY TGIYGQGVRVPVRMQGSKEIPVKNVTFRDMSVGITYKKKHIFQCAYVQGR |
Full Sequence |
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Protein Sequence Length: 503 Download |
MVEPLPITRR RFLSSHKSLV TVFWIAAFAS LFIWQSRGRG GGGGGASLYR VNGSLSSVFW 60 WTATTTTTSS ADAGEFPRLR PVSFNLTDFG AVGDGVTVNT EAFERAVYAI SKLSKKGGGQ 120 LNVPPGRWLT APFNLTSFMT LFLAEDAEIL AVQDETLWPL LPPLPSYGYG REHYGPRYGS 180 FIHGQNLKDV VVTGNNGSIN GQGVYWWKKY RSKLLNHTRG PLVQIMWSSD VVFANITLRD 240 SPFWTLHPYD CKNVTITNMT ILAPVFEAPN TDGIDPDSCE DMLIENSYIS VGDDGIAIKS 300 GWDQYGTNYG RPSKNILIRN LIIRSMVSAG ISIGSEMSGG VSNITVENIL IWSSRRGVRI 360 KTAPGRGGYV RDITFRNVTL DELRVGIVVK TDYNEHPDGG FNPQAFPVLE NINYTGIYGQ 420 GVRVPVRMQG SKEIPVKNVT FRDMSVGITY KKKHIFQCAY VQGRVIGTIF PAPCENLDRY 480 DEQEQLVKQS DSQNATDIDY EI* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-23 | 81 | 446 | 375 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-28 | 77 | 474 | 417 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 4.0e-30 | 83 | 446 | 371 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 6.0e-36 | 181 | 461 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-61 | 84 | 403 | 342 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAN28906.1 | 0 | 10 | 502 | 3 | 484 | At3g42950/F18P9_110 [Arabidopsis thaliana] |
RefSeq | NP_189881.1 | 0 | 10 | 502 | 3 | 484 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002277239.1 | 0 | 12 | 501 | 26 | 492 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 12 | 501 | 27 | 494 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 12 | 501 | 25 | 493 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 77 | 443 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 77 | 443 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 77 | 443 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 77 | 443 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 4e-16 | 128 | 404 | 52 | 324 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |