y
Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a005694m |
Family | GH28 |
Protein Properties | Length: 475 Molecular Weight: 51729.1 Isoelectric Point: 6.2854 |
Chromosome | Chromosome/Scaffold: 211 Start: 332461 End: 335598 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 76 | 425 | 0 |
QSDGGAQLFVPAGKWLTGSFNLTSHFTLYLHQDAVILASQEINTWAVIDPLPSYGHGRDAAGGRYISLIFGTNLTDVVITGENGTVDGQGLVWWQQFKKK KLKYTRPYLLEIMHSDNIQISNLTFLNSPSWNIHPVYTSNIIIQGITILAPITSPNTDGINPDSCTNTRIEDTYIVSGDDCIAVKSGWDEYGINYGMPTK HLIIRRLTCISPYSAAIALGSEMSGGIQDVRADDITAIQTESAVRIKTGVGRGGYVKDIFVKNMKLHTMKWVFWITGNYGSHADTHFDPNALPEIKGINY RDIVAENVTMAARLEGISGDPFTGICIYNATIGLSKKPKKYQWTCSDVEG |
Full Sequence |
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Protein Sequence Length: 475 Download |
MKKQMKVFVL VVVMVAGVIM EGTEGRKGKI AGSLEYSAIS CRAHSASILD FGGVGDGVTL 60 NTQAFRSAVD HLSQFQSDGG AQLFVPAGKW LTGSFNLTSH FTLYLHQDAV ILASQEINTW 120 AVIDPLPSYG HGRDAAGGRY ISLIFGTNLT DVVITGENGT VDGQGLVWWQ QFKKKKLKYT 180 RPYLLEIMHS DNIQISNLTF LNSPSWNIHP VYTSNIIIQG ITILAPITSP NTDGINPDSC 240 TNTRIEDTYI VSGDDCIAVK SGWDEYGINY GMPTKHLIIR RLTCISPYSA AIALGSEMSG 300 GIQDVRADDI TAIQTESAVR IKTGVGRGGY VKDIFVKNMK LHTMKWVFWI TGNYGSHADT 360 HFDPNALPEI KGINYRDIVA ENVTMAARLE GISGDPFTGI CIYNATIGLS KKPKKYQWTC 420 SDVEGVTGAV VPPPCALLPP TQVDEKFGMC DFPSDSLAID SVELQKCSFE MNLF* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-22 | 47 | 341 | 306 | + polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-24 | 33 | 345 | 322 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 6.0e-27 | 26 | 407 | 398 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-27 | 144 | 423 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 4.0e-53 | 46 | 341 | 319 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A7PZL3 | 0 | 24 | 474 | 41 | 490 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
GenBank | AAP33475.1 | 0 | 9 | 473 | 4 | 474 | polygalacturonase-like protein [Fragaria x ananassa] |
RefSeq | XP_002277736.1 | 0 | 24 | 474 | 29 | 478 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002278930.1 | 0 | 22 | 469 | 29 | 475 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301370.1 | 0 | 18 | 472 | 15 | 468 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 44 | 407 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 44 | 407 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 44 | 407 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 44 | 407 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-16 | 78 | 381 | 37 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |