y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.007G012900.1 |
Family | GH28 |
Protein Properties | Length: 478 Molecular Weight: 52248.4 Isoelectric Point: 6.0584 |
Chromosome | Chromosome/Scaffold: 07 Start: 1014214 End: 1018077 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 87 | 434 | 0 |
GGGAQLVVPPGKWLTGSFNLTSHFTLFIHKDAVILGTQDESEWPHLPVLPSYGRGRDAPNGRFSSLIFGTNLTDVVITGNNGTIDGQGAYWWKKFKEEKL NVTRPYLIEIMYSSQVQISNLTLVNSPSWNVHPIYSSDIIIQHLTILAPVDSPNTDGIDPDSCTNTKIEDSFVVSGDDCIAVKSGWDQYGIKFNMPTKNL VIRRFTCISPDSATIALGSEMSGGIEDVRAEDITAINTQSGVRIKTAVGRGAYVKDIYVRRITLNTMKYVFWMTGSYGSHPDPGFDPKALPVIKGINYRD VVADNVTYSARLDGIENDPFTDICISNVNIKLTSKPKELQWNCTHIQG |
Full Sequence |
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Protein Sequence Length: 478 Download |
MEFSRKSLVI KTLISAIFLL GLSSWSVAEF RVAGHATTST TIEFPALNCR KHSAVLTEFG 60 GVGDGKTSNT EAFKAAIANL SQLAADGGGA QLVVPPGKWL TGSFNLTSHF TLFIHKDAVI 120 LGTQDESEWP HLPVLPSYGR GRDAPNGRFS SLIFGTNLTD VVITGNNGTI DGQGAYWWKK 180 FKEEKLNVTR PYLIEIMYSS QVQISNLTLV NSPSWNVHPI YSSDIIIQHL TILAPVDSPN 240 TDGIDPDSCT NTKIEDSFVV SGDDCIAVKS GWDQYGIKFN MPTKNLVIRR FTCISPDSAT 300 IALGSEMSGG IEDVRAEDIT AINTQSGVRI KTAVGRGAYV KDIYVRRITL NTMKYVFWMT 360 GSYGSHPDPG FDPKALPVIK GINYRDVVAD NVTYSARLDG IENDPFTDIC ISNVNIKLTS 420 KPKELQWNCT HIQGVTNQVT PEPCNLLPEK EIDCPFPEDR LPIDNVKLKT CSISGNF* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 8.0e-19 | 58 | 350 | 304 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-23 | 56 | 417 | 369 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 2.0e-27 | 56 | 441 | 402 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 3.0e-28 | 153 | 416 | 275 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-53 | 54 | 350 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU17976.1 | 0 | 13 | 473 | 15 | 471 | unknown [Glycine max] |
RefSeq | XP_002273143.1 | 0 | 17 | 476 | 5 | 461 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002273669.1 | 0 | 1 | 476 | 1 | 473 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002327490.1 | 0 | 41 | 472 | 19 | 449 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513653.1 | 0 | 4 | 472 | 7 | 470 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 56 | 417 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 56 | 417 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 56 | 417 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 56 | 417 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 9e-16 | 99 | 332 | 52 | 283 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |