y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.001G016500.1 |
Family | GH28 |
Protein Properties | Length: 490 Molecular Weight: 54541.7 Isoelectric Point: 9.458 |
Chromosome | Chromosome/Scaffold: 01 Start: 1521988 End: 1526333 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 102 | 448 | 0 |
RGGGGQLNVPPGKWLTAPFNLTSHMTLFLAEDAEILGIQDEKQWPLMPPLPSYGYGREHHGPRYGSLIHGQNLKDVVITGDNGTINGQGQSWWKKFRQKL LNHTRGPLMQIMWSSDIVIANITLRDSPFWTFHPYDCKNVTVRNVTILAPVREAPNTDGIDPDSCEDVVIEDCYISVGDDAIAIKSGWDQYGIAYARPSR NILIRNLIVRSMVSAGISIGSEMSGGVSDVTIENLLVWSSRRAVRIKTATGRGGYVRHITYRNITFDNVRVGIVIKTDYNEHPDDDFDPKALPIVKDISF TGIHGQGVRVPVRIHGSEDIPIRNVTFRDMSVGLTYKKKHIFQCAFI |
Full Sequence |
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Protein Sequence Length: 490 Download |
MMETLPVGRF QFKRLVAAFL SSYRTLFILL WIVAFGSVFI WQRKIIGAGI SVSVKTGLSR 60 PMPKMRPFAF NLTDFGGVGD GKTLNTAAFE RAVLAISKLG KRGGGGQLNV PPGKWLTAPF 120 NLTSHMTLFL AEDAEILGIQ DEKQWPLMPP LPSYGYGREH HGPRYGSLIH GQNLKDVVIT 180 GDNGTINGQG QSWWKKFRQK LLNHTRGPLM QIMWSSDIVI ANITLRDSPF WTFHPYDCKN 240 VTVRNVTILA PVREAPNTDG IDPDSCEDVV IEDCYISVGD DAIAIKSGWD QYGIAYARPS 300 RNILIRNLIV RSMVSAGISI GSEMSGGVSD VTIENLLVWS SRRAVRIKTA TGRGGYVRHI 360 TYRNITFDNV RVGIVIKTDY NEHPDDDFDP KALPIVKDIS FTGIHGQGVR VPVRIHGSED 420 IPIRNVTFRD MSVGLTYKKK HIFQCAFIQG RVIGTIFPAP CENLDRYNEE GQLVKRSTAQ 480 NITDIDYDI* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 7.0e-27 | 67 | 433 | 384 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-27 | 60 | 461 | 424 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 7.0e-34 | 69 | 433 | 382 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 9.0e-40 | 173 | 440 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-65 | 69 | 391 | 348 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69988.1 | 0 | 1 | 489 | 1 | 509 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277239.1 | 0 | 1 | 488 | 1 | 492 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 9 | 488 | 17 | 494 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 1 | 489 | 1 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 1 | 488 | 2 | 493 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 63 | 430 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 63 | 430 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 63 | 430 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 63 | 430 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 8e-18 | 115 | 415 | 52 | 354 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |