y
Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00042769m |
Family | GH28 |
Protein Properties | Length: 685 Molecular Weight: 74227.6 Isoelectric Point: 10.4606 |
Chromosome | Chromosome/Scaffold: 017268 Start: 1531 End: 6408 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 293 | 646 | 0 |
AAIAERGGGRLTVPAGRWLTAPFNLTSRMTLFLAAGAEILGIQDERYWPLMSPLPSYGYGREHKGPRYGSLIHGQDLKDVTITGHNGTINGQGQSWWVKF RRKLLNHTRGPLVQLMRSSNIIISNITLRDSPFWTLHMYDCKNVTIVETTILAPIAGAPNTDGIDPDSCENVVIKNCYISVGDDGIAIKSGWDQYGIAYG RPSANIIIQNVIIRSMVSAGVSIGSEMSGGVSNVLVENVHVWDSRRGVRIKTAPGRGAYVSNIVYRNISLENVRVGIVIKTDYNEHPDEGFDPKAVPIIE NISYTSIHGQGVRVSVRIQGSAEIPVKNVTFHDMSVGIADRKHHVFQCSFVQGQ |
Full Sequence |
---|
Protein Sequence Length: 685 Download |
MGLFMDLFFQ QSTHLLLSVG EASRATDDTR NPQRRHLARR YIAEPLKPHG RRRNLSIVVI 60 RAPKRSGPGP NPGRHANPPS PLAAGPTAAR CRGRRCGPER RPAVATRSDG SARPRGSPVI 120 PPPPPMWFRP NSTPVSTAAA PSQQPSTDQA TTITSPAAAS HAPSPPDPML ETAAASSPRA 180 AAAAASAGAA AAASAVSSPR RGGATAHHHR RWAPAPFRAC LVALWLVGFG LVFLWQSTSV 240 GRVRLYTRPP MPRRAPASMG QWVASPPVYD LREFGAVGDG RTVNTASFEA AVAAIAERGG 300 GRLTVPAGRW LTAPFNLTSR MTLFLAAGAE ILGIQDERYW PLMSPLPSYG YGREHKGPRY 360 GSLIHGQDLK DVTITGHNGT INGQGQSWWV KFRRKLLNHT RGPLVQLMRS SNIIISNITL 420 RDSPFWTLHM YDCKNVTIVE TTILAPIAGA PNTDGIDPDS CENVVIKNCY ISVGDDGIAI 480 KSGWDQYGIA YGRPSANIII QNVIIRSMVS AGVSIGSEMS GGVSNVLVEN VHVWDSRRGV 540 RIKTAPGRGA YVSNIVYRNI SLENVRVGIV IKTDYNEHPD EGFDPKAVPI IENISYTSIH 600 GQGVRVSVRI QGSAEIPVKN VTFHDMSVGI ADRKHHVFQC SFVQGQVIGY VFPMPCKNLD 660 MYNERRELVK QSTFQNISDI DYSF* 720 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-25 | 265 | 601 | 358 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 2.0e-29 | 270 | 631 | 373 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 1.0e-29 | 273 | 656 | 400 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-43 | 364 | 628 | 271 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-62 | 268 | 586 | 342 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC84640.1 | 0 | 207 | 684 | 41 | 526 | hypothetical protein OsI_31518 [Oryza sativa Indica Group] |
GenBank | EEE69791.1 | 0 | 259 | 684 | 1 | 426 | hypothetical protein OsJ_29512 [Oryza sativa Japonica Group] |
RefSeq | NP_001063274.1 | 0 | 207 | 684 | 41 | 526 | Os09g0439400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002277239.1 | 0 | 196 | 684 | 2 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002460269.1 | 0 | 197 | 684 | 27 | 518 | hypothetical protein SORBIDRAFT_02g025730 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 270 | 625 | 29 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 270 | 625 | 29 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 270 | 625 | 29 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 270 | 625 | 29 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-19 | 310 | 628 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
CX102356 | 331 | 321 | 651 | 0 |
HO778855 | 425 | 218 | 639 | 0 |
JG964101 | 292 | 381 | 672 | 0 |
JG924062 | 278 | 408 | 685 | 0 |
CX102356 | 26 | 651 | 676 | 0.001 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|