y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10017517 |
Family | GH28 |
Protein Properties | Length: 482 Molecular Weight: 52299.2 Isoelectric Point: 4.5303 |
Chromosome | Chromosome/Scaffold: 1253 Start: 366639 End: 369191 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 83 | 433 | 0 |
SSSGGSLLYVPPGRWLTGSFNITGSHFTLYLDQDAILLASLDEDQYPVIEPLPSYGRGRDADGGRYSSLIFGTNLTDVVITGANGTIDGQGELWWKKYRA GELNFTRPYLIELMYSTDIQISNLTLMNSPSWNVHPVYSSNILVKGLTILAPVTSANTDGINPDSCTNTRIEDCFIVSGDDCVAVKSGWDEYGTAFGMPT KHLVIKRLTCISPFSAAIALGSEMSGGIQDVRAEDITAINTESGVRIKTAVGRGGYVKDIYVRRMTMKTMKWVFWMTGNYGSHPDNNYDPNAIPVVQNIN YRDMVAENVTMAARLEGIGGDPFTGICISNVTIGLAEKPKKLQWNCTDVAG |
Full Sequence |
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Protein Sequence Length: 482 Download |
MFQVMEVTVT AAVCAVLALV VIAESSSSVE AMKKSMELDY FEFTGKDCRA NVASITDFGG 60 IGDGNTSNTM AFQDAMDSLA NYSSSGGSLL YVPPGRWLTG SFNITGSHFT LYLDQDAILL 120 ASLDEDQYPV IEPLPSYGRG RDADGGRYSS LIFGTNLTDV VITGANGTID GQGELWWKKY 180 RAGELNFTRP YLIELMYSTD IQISNLTLMN SPSWNVHPVY SSNILVKGLT ILAPVTSANT 240 DGINPDSCTN TRIEDCFIVS GDDCVAVKSG WDEYGTAFGM PTKHLVIKRL TCISPFSAAI 300 ALGSEMSGGI QDVRAEDITA INTESGVRIK TAVGRGGYVK DIYVRRMTMK TMKWVFWMTG 360 NYGSHPDNNY DPNAIPVVQN INYRDMVAEN VTMAARLEGI GGDPFTGICI SNVTIGLAEK 420 PKKLQWNCTD VAGITSGVTP KPCDLLPDQG QEKKASCNFP EDTLAIEDIQ VHSCSYSKRY 480 F* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 9.0e-19 | 55 | 443 | 411 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-22 | 54 | 415 | 370 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 1.0e-22 | 50 | 353 | 317 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-26 | 152 | 431 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-51 | 52 | 350 | 323 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002278930.1 | 0 | 33 | 481 | 33 | 480 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299511.1 | 0 | 33 | 480 | 33 | 479 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301370.1 | 0 | 33 | 481 | 23 | 470 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002303605.1 | 0 | 5 | 475 | 1 | 465 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 33 | 481 | 33 | 480 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 7.00649e-44 | 53 | 415 | 28 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 7.00649e-44 | 53 | 415 | 28 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 7.00649e-44 | 53 | 415 | 28 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 7.00649e-44 | 53 | 415 | 28 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000003 | 97 | 389 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |