y
Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa004793m |
Family | GH28 |
Protein Properties | Length: 492 Molecular Weight: 55025.1 Isoelectric Point: 9.4082 |
Chromosome | Chromosome/Scaffold: 7 Start: 18896918 End: 18901927 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 104 | 452 | 0 |
KKGGGQLNVPSGRWLTAPFNLTSHMTLFLAEDAEILGIQDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQNLKDIVITGHNGTINGQGQTWWKKYRQKL LNHTRGPLVQIMWSSNILISNITLRDSPFWTLHPYDCKNVTVRNVTILAPVVEAPNTDGIDPDSCEDMVIEDCYISVGDDGIAIKSGWDQYGISYGRPSK NILIRNLVVRSMVSAGVSIGSEMSGGVSNVTVENVLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRVGIVIKTDYNEHPDEGYDPKALPVLKDISF TSVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGLTYKKKHIFQCAFVQG |
Full Sequence |
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Protein Sequence Length: 492 Download |
MVETIPLGRF HHQRLDLKRW FPTFLSSHKT LFTVLWIAAF ASVFVWQRNI VDGFSIFKRV 60 PVRAMPKLRP VAFNLTDFGA VGDGVTLNTE AFEKAVLAIS KLGKKGGGQL NVPSGRWLTA 120 PFNLTSHMTL FLAEDAEILG IQDEKYWPLM PPLPSYGYGR EHPGPRYGSL IHGQNLKDIV 180 ITGHNGTING QGQTWWKKYR QKLLNHTRGP LVQIMWSSNI LISNITLRDS PFWTLHPYDC 240 KNVTVRNVTI LAPVVEAPNT DGIDPDSCED MVIEDCYISV GDDGIAIKSG WDQYGISYGR 300 PSKNILIRNL VVRSMVSAGV SIGSEMSGGV SNVTVENVLV WSSRRAVRIK TAPGRGGYVR 360 HITYRNLTFD NVRVGIVIKT DYNEHPDEGY DPKALPVLKD ISFTSVHGQG VRVPVRIHGS 420 EEIPVRNVTF RDMSVGLTYK KKHIFQCAFV QGRVIGTIFP APCENLDRYD EQGKLVKHSA 480 SQNMTDIDYD F* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 7.0e-27 | 47 | 435 | 406 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-30 | 30 | 463 | 454 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 8.0e-36 | 72 | 435 | 375 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 5.0e-39 | 171 | 442 | 278 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-69 | 72 | 393 | 345 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69988.1 | 0 | 1 | 491 | 1 | 509 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277239.1 | 0 | 1 | 491 | 1 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 1 | 491 | 1 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 1 | 491 | 1 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 1 | 491 | 2 | 494 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 66 | 432 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 66 | 432 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 66 | 432 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 66 | 432 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 5e-18 | 117 | 430 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778855 | 447 | 1 | 447 | 0 |
FN769574 | 320 | 147 | 466 | 0 |
FE707848 | 301 | 74 | 374 | 0 |
CX102356 | 331 | 128 | 458 | 0 |
CX102356 | 26 | 458 | 483 | 4.8 |
Sequence Alignments (This image is cropped. Click for full image.) |
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