y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000175027 |
Family | GH28 |
Protein Properties | Length: 556 Molecular Weight: 60083.8 Isoelectric Point: 4.972 |
Chromosome | Chromosome/Scaffold: 003279117 Start: 3607 End: 6598 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 134 | 481 | 0 |
DKGGAQLYVPPGRWLTGSFNLTSHLTLFLEXDAVILGSQDPSHWEIVEPLPSYGRGIELPGRRYRSLINGYMLHDVVITGDNGTINGQGSVWWDWFSSQS LNYSRPHLVEFVMSKXVVVSNLTFVNAPAYNIHPVYCSNVHVLNISVSAPPDSPHTVGIVPDSSDTVCIEDCIIGMGYDAIALKSGWDEYGIAYGRPTTN VHIRHVTLQSATGSSLALGSEMSGGISNVHVEQVRLHNSISGIQFRTTKGRGGYIKDIIISDVEVENIYMAFGASGQFGSHPDDKYDPNALPVLDHITLQ DVVGTNITIAGCFTGIEESPFTSFCLSNISLSLNSASPTTWDCSYVSG |
Full Sequence |
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Protein Sequence Length: 556 Download |
MPVHHHTVRA IRQPLLFGCS ASSSSSSLSF SALHFYCFLA TPAAERAFTH EDAIDLCDVW 60 IXFSIGVVLL LLLAVSNAVE IDGEDDEKPC DNKLTLEPRP HSVSILEFGA VGDGKTLNTL 120 AFQNAIFYLK SFADKGGAQL YVPPGRWLTG SFNLTSHLTL FLEXDAVILG SQDPSHWEIV 180 EPLPSYGRGI ELPGRRYRSL INGYMLHDVV ITGDNGTING QGSVWWDWFS SQSLNYSRPH 240 LVEFVMSKXV VVSNLTFVNA PAYNIHPVYC SNVHVLNISV SAPPDSPHTV GIVPDSSDTV 300 CIEDCIIGMG YDAIALKSGW DEYGIAYGRP TTNVHIRHVT LQSATGSSLA LGSEMSGGIS 360 NVHVEQVRLH NSISGIQFRT TKGRGGYIKD IIISDVEVEN IYMAFGASGQ FGSHPDDKYD 420 PNALPVLDHI TLQDVVGTNI TIAGCFTGIE ESPFTSFCLS NISLSLNSAS PTTWDCSYVS 480 GSSESVFPEP CSDLNTSYSN PSSAHISLLT GNGKAVGNMS GESWYGKLVT EEKSGSGVEV 540 NKRVFVAKVK TEGDAL 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 7.0e-17 | 99 | 498 | 426 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-21 | 208 | 438 | 239 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 4.0e-23 | 101 | 401 | 309 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 6.0e-29 | 100 | 401 | 320 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 1.0e-48 | 103 | 445 | 375 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 76 | 491 | 12 | 427 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 76 | 491 | 14 | 429 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 78 | 500 | 14 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 78 | 515 | 16 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516982.1 | 0 | 76 | 512 | 12 | 446 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2e-33 | 101 | 461 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-33 | 101 | 461 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-33 | 101 | 461 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-33 | 101 | 461 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.0000000000005 | 147 | 480 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO797483 | 420 | 95 | 514 | 0 |
HO797919 | 378 | 78 | 455 | 0 |
DW501410 | 283 | 77 | 359 | 0 |
DY263658 | 316 | 77 | 392 | 0 |
FC882641 | 247 | 77 | 323 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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