y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.002G162400.4 |
Family | GH28 |
Protein Properties | Length: 311 Molecular Weight: 33715.6 Isoelectric Point: 4.7547 |
Chromosome | Chromosome/Scaffold: 02 Start: 12262911 End: 12265643 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 21 | 222 | 0 |
AGRYSSLIFGTNLTDVIITGNNGTIDGQGAFWWQNFHKGKLKYTRPYLIEIMFSDTIQISNLTLLNSPSWNVHPVYSRDILVQGITIIAPISSPNTDGIN PDSCTNTKIEDCYIVSGDDCVAVKSGWDEYGIAFGMPTKQLVIRRLTCISPYSATIALGSEMSGGIEDVRAEDITAIHTESGVRIKTAVGRGGDMVADNV TM |
Full Sequence |
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Protein Sequence Length: 311 Download |
MQEWPVMKPL PSYGRGRDAA AGRYSSLIFG TNLTDVIITG NNGTIDGQGA FWWQNFHKGK 60 LKYTRPYLIE IMFSDTIQIS NLTLLNSPSW NVHPVYSRDI LVQGITIIAP ISSPNTDGIN 120 PDSCTNTKIE DCYIVSGDDC VAVKSGWDEY GIAFGMPTKQ LVIRRLTCIS PYSATIALGS 180 EMSGGIEDVR AEDITAIHTE SGVRIKTAVG RGGDMVADNV TMAARLEGIA GDPFKEICIS 240 NVTIGLAPKA KKVPWTCTEI EGMTSGVSPR PCDLLPDQGP EKITSCDFPP ENIPIDLVQF 300 KMCSFGMSYM * 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-14 | 42 | 221 | 184 | + polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-16 | 40 | 220 | 186 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 6.0e-21 | 28 | 213 | 188 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-27 | 28 | 246 | 224 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 9.0e-34 | 11 | 222 | 226 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAP33475.1 | 0 | 1 | 305 | 119 | 470 | polygalacturonase-like protein [Fragaria x ananassa] |
EMBL | CBI34379.1 | 0 | 2 | 310 | 125 | 433 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277736.1 | 0 | 1 | 309 | 122 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301370.1 | 0 | 1 | 310 | 114 | 470 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511903.1 | 0 | 1 | 310 | 125 | 472 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1e-27 | 24 | 229 | 113 | 356 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1e-27 | 24 | 229 | 113 | 356 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1e-27 | 24 | 229 | 113 | 356 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1e-27 | 24 | 229 | 113 | 356 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000004 | 43 | 207 | 117 | 283 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DT525200 | 255 | 57 | 311 | 0 |
CV262666 | 253 | 59 | 311 | 0 |
ES810566 | 338 | 17 | 307 | 0 |
DT489450 | 288 | 71 | 311 | 0 |
DT507007 | 225 | 1 | 222 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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