y
Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.D01730.1 |
Family | GH28 |
Protein Properties | Length: 450 Molecular Weight: 49433.4 Isoelectric Point: 8.9051 |
Chromosome | Chromosome/Scaffold: 4 Start: 31321718 End: 31326414 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 75 | 421 | 0 |
RGGTLLYIPPGVYLTGSFSLTSHMTLYLASGAVIKATQDTWNWPLIAPLPSYGRGRERPGRRYMSLIQGHGLRDVVITGENGTIDGQGEVWWNMWRQRTL QYTRPHLVEFMNSRSIMISNVVFKNSPFWNIHPVYCSNVVIRYVTILAPYDSPNTDGIDPDSSSNVCIEDSHISVGDDLVSVKSGWDEYGIRYGRRSSGI TIRRITGSSPFAGISVGSETSGGVENVWIENINLYNVGIGIHIKTNIGRGGFIRDITVSNVFMENVRKGIRIMGNVGDHPDEYYNPSALPYVKGIRIKDV WGVKVQEAGLIQGLKNAPFTGICLSNIYLHGVPGQRRATWTCSDVSG |
Full Sequence |
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Protein Sequence Length: 450 Download |
MVRFAVSVVL AILMVASVTL EGVAGSMITC SGIVPMRYRN DKISITDFGG VGDGRTVNTK 60 AFSEAIYRIQ HLRRRGGTLL YIPPGVYLTG SFSLTSHMTL YLASGAVIKA TQDTWNWPLI 120 APLPSYGRGR ERPGRRYMSL IQGHGLRDVV ITGENGTIDG QGEVWWNMWR QRTLQYTRPH 180 LVEFMNSRSI MISNVVFKNS PFWNIHPVYC SNVVIRYVTI LAPYDSPNTD GIDPDSSSNV 240 CIEDSHISVG DDLVSVKSGW DEYGIRYGRR SSGITIRRIT GSSPFAGISV GSETSGGVEN 300 VWIENINLYN VGIGIHIKTN IGRGGFIRDI TVSNVFMENV RKGIRIMGNV GDHPDEYYNP 360 SALPYVKGIR IKDVWGVKVQ EAGLIQGLKN APFTGICLSN IYLHGVPGQR RATWTCSDVS 420 GAALEVSPGV CSELASTYHS SICSNYFRD* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 5.0e-26 | 43 | 419 | 400 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 8.0e-27 | 40 | 441 | 422 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 7.0e-27 | 43 | 405 | 375 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-33 | 79 | 419 | 357 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-50 | 15 | 340 | 349 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 1 | 447 | 1 | 444 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 1 | 446 | 1 | 446 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 1 | 447 | 1 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 36 | 447 | 1 | 412 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 10 | 446 | 13 | 445 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1.99993e-41 | 42 | 405 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1.99993e-41 | 42 | 405 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1.99993e-41 | 42 | 405 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1.99993e-41 | 42 | 405 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 9e-22 | 86 | 374 | 51 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |