y
Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.004G047800.1 |
Family | GH28 |
Protein Properties | Length: 477 Molecular Weight: 51848.3 Isoelectric Point: 7.8897 |
Chromosome | Chromosome/Scaffold: 04 Start: 5522103 End: 5525161 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 85 | 436 | 0 |
QHASDGGATLIVPPGKWLTGPFNLTSHFTLFLQKGAVILASQNELEWPHLAILPSYGRGRDAPGGRFSSLIFGTNLTDVVITGQNGTIDGQGSYWWDKFH KKQLTLTRPYMIEIMYSDQIQISNLTLVNSPTWFVHPIYSSNIIVSGLTILAPVDSPNTDGVNPDSCTNIRIEDCFIVSGDDCIAVKSGWDEYGIKFGRP TQHLVIRRVTCISPDSAMVALGSEMSGGIEDVRVDDLTAINTESAIRIKTAVGRGGFVKNIFVRGLNLNTMKYVFWMTGSYGEHPDPNFDPKALPTITGI NYKDIVAKNVTYSAKLEGISNDPFTGICISNVSVQVSAQQKKLQWNCTNVAG |
Full Sequence |
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Protein Sequence Length: 477 Download |
MSHTMKQCLH LRNAHVLGVI SLIIILGSLN VKVAESRVYS SLANIEYPAI NCRKHSASLT 60 DFGGVGDGKT SNTKAFQSAI TKLSQHASDG GATLIVPPGK WLTGPFNLTS HFTLFLQKGA 120 VILASQNELE WPHLAILPSY GRGRDAPGGR FSSLIFGTNL TDVVITGQNG TIDGQGSYWW 180 DKFHKKQLTL TRPYMIEIMY SDQIQISNLT LVNSPTWFVH PIYSSNIIVS GLTILAPVDS 240 PNTDGVNPDS CTNIRIEDCF IVSGDDCIAV KSGWDEYGIK FGRPTQHLVI RRVTCISPDS 300 AMVALGSEMS GGIEDVRVDD LTAINTESAI RIKTAVGRGG FVKNIFVRGL NLNTMKYVFW 360 MTGSYGEHPD PNFDPKALPT ITGINYKDIV AKNVTYSAKL EGISNDPFTG ICISNVSVQV 420 SAQQKKLQWN CTNVAGVTNN VTPTPCALLP QKEKTDCAFP TDKLPIENVQ FKTCSL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-21 | 62 | 345 | 299 | + polygalacturonase | ||
PLN03003 | PLN03003 | 9.0e-28 | 59 | 443 | 398 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-28 | 56 | 445 | 404 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 7.0e-32 | 155 | 434 | 291 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 6.0e-59 | 48 | 406 | 387 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD32865.1 | 0 | 10 | 476 | 5 | 462 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ACU17976.1 | 0 | 5 | 476 | 1 | 471 | unknown [Glycine max] |
RefSeq | XP_002327490.1 | 0 | 19 | 475 | 1 | 449 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 35 | 475 | 31 | 474 | polygalacturonase, putative [Ricinus communis] |
RefSeq | XP_002513653.1 | 0 | 15 | 475 | 11 | 470 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 24 | 419 | 1 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 24 | 419 | 1 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 24 | 419 | 1 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 24 | 419 | 1 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 8e-17 | 74 | 392 | 19 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |