y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 30174.m008646 |
Family | GH28 |
Protein Properties | Length: 472 Molecular Weight: 51585.1 Isoelectric Point: 7.2065 |
Chromosome | Chromosome/Scaffold: 30174 Start: 1923251 End: 1925573 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 84 | 423 | 0 |
ATDGGSQLFVPAGKWLTGSFSLTSHFTLFLHKDAVLLGSQDLKEWPLLKPLPSYGRGRDAAAGRYSSLIFGTNLTDIIVTGNNGTIDGQGAFWWQQFKKG KLKYTRPYLIEIMYSDNIQISNLTLLNSPSWNVHPVYSSNILIQGITIIAPVTSPNTDGINPDCYIISGDDCVAVKSGWDEYGIAFGMPTKQLVIRRLTC ISPYSATIALGSEMSGGIQDVRAEDITAIHTESGVRIKTAVGRGGYVKDIYVKRMTMHTMKWAFWMTGNYGSHADKNYDPNALPVIEGINYRDMVADNVS MAARLEGISGDPFKQICISNVTIGMAAKAKKIPWTCTDIE |
Full Sequence |
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Protein Sequence Length: 472 Download |
MELLLISSIK PRVTNVISVF VILALLSARG AESRKARVLD SFEYNAISCR AHSASITDFG 60 GVGDGITSNT KAFQDAIAHL SQYATDGGSQ LFVPAGKWLT GSFSLTSHFT LFLHKDAVLL 120 GSQDLKEWPL LKPLPSYGRG RDAAAGRYSS LIFGTNLTDI IVTGNNGTID GQGAFWWQQF 180 KKGKLKYTRP YLIEIMYSDN IQISNLTLLN SPSWNVHPVY SSNILIQGIT IIAPVTSPNT 240 DGINPDCYII SGDDCVAVKS GWDEYGIAFG MPTKQLVIRR LTCISPYSAT IALGSEMSGG 300 IQDVRAEDIT AIHTESGVRI KTAVGRGGYV KDIYVKRMTM HTMKWAFWMT GNYGSHADKN 360 YDPNALPVIE GINYRDMVAD NVSMAARLEG ISGDPFKQIC ISNVTIGMAA KAKKIPWTCT 420 DIEGITTGVS PRPCDLLPDQ GPEKLTACDF PPENIPIDSV QFQKCTYSMH YM 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 3.0e-16 | 56 | 340 | 304 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-20 | 12 | 432 | 473 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 5.0e-23 | 51 | 344 | 311 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-25 | 152 | 341 | 204 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-50 | 54 | 340 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAP33475.1 | 0 | 18 | 468 | 3 | 471 | polygalacturonase-like protein [Fragaria x ananassa] |
RefSeq | XP_002277736.1 | 0 | 31 | 471 | 28 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002278930.1 | 0 | 30 | 472 | 29 | 480 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301370.1 | 0 | 25 | 472 | 14 | 470 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511903.1 | 0 | 1 | 472 | 1 | 472 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 3.00018e-42 | 52 | 406 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 3.00018e-42 | 52 | 406 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 3.00018e-42 | 52 | 406 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 3.00018e-42 | 52 | 406 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.0000000000005 | 86 | 343 | 37 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES810566 | 338 | 141 | 469 | 0 |
EG657591 | 286 | 1 | 277 | 0 |
EG661100 | 284 | 4 | 278 | 0 |
DY297578 | 350 | 1 | 340 | 0 |
GR218862 | 280 | 202 | 472 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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