y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.011G194200.1 |
Family | GH28 |
Protein Properties | Length: 455 Molecular Weight: 49071.5 Isoelectric Point: 5.8162 |
Chromosome | Chromosome/Scaffold: 11 Start: 46949023 End: 46952737 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 72 | 418 | 0 |
DKGGAQLYVPPGRWLTGSFNLTSHLTLFLEKGAVILGSQDPSHWDIVEPLPSYGPGTELPGKRYRSLVNGYMLRDVVITGDNGTIDGQGSVWWEWFTSHS LNYSCPHLVEFVSSESILVSNITFLNAPAYNMHPVYCSHVHIHHITVYAPPGSPYTVGIVPDSSDNVCIEDCSISMGYDAIALKSGWDEYGIAYGRPTAN VHIRRVQLQSFSGSSLAFGSQMSGGISDVQVQQLHLYDSLTGIEFRTTKGRGGYIKEIAISDVNMLNIKTAFGANGHFGSHPDDKFDPDALPLVAKITIQ NIIGTNISMAGNFTGIEESPFTSICLSNVSLSINSASSSPWQCSYVS |
Full Sequence |
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Protein Sequence Length: 455 Download |
MKMPVALLLL LALCNAIKIH GEESNGLCDV NLTLRSRPHS VSILEFGAVG DGKTLNTIAF 60 QNAIFYLKSF ADKGGAQLYV PPGRWLTGSF NLTSHLTLFL EKGAVILGSQ DPSHWDIVEP 120 LPSYGPGTEL PGKRYRSLVN GYMLRDVVIT GDNGTIDGQG SVWWEWFTSH SLNYSCPHLV 180 EFVSSESILV SNITFLNAPA YNMHPVYCSH VHIHHITVYA PPGSPYTVGI VPDSSDNVCI 240 EDCSISMGYD AIALKSGWDE YGIAYGRPTA NVHIRRVQLQ SFSGSSLAFG SQMSGGISDV 300 QVQQLHLYDS LTGIEFRTTK GRGGYIKEIA ISDVNMLNIK TAFGANGHFG SHPDDKFDPD 360 ALPLVAKITI QNIIGTNISM AGNFTGIEES PFTSICLSNV SLSINSASSS PWQCSYVSGF 420 SESVFPEPCS ELNNPDASSS CFSLLKPNGR AAVL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-14 | 35 | 339 | 318 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-19 | 146 | 376 | 240 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-21 | 30 | 340 | 327 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 5.0e-24 | 32 | 395 | 371 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 9.0e-47 | 41 | 392 | 390 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 15 | 429 | 13 | 427 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 1 | 429 | 1 | 429 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 16 | 434 | 14 | 431 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 1 | 452 | 1 | 448 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516982.1 | 0 | 3 | 454 | 1 | 454 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 3e-30 | 39 | 399 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 3e-30 | 39 | 399 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 3e-30 | 39 | 399 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 3e-30 | 39 | 399 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.0000000000005 | 85 | 339 | 52 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |