y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000581832 |
Family | GH28 |
Protein Properties | Length: 443 Molecular Weight: 48229.7 Isoelectric Point: 7.541 |
Chromosome | Chromosome/Scaffold: 019085553 Start: 8494 End: 13057 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 71 | 418 | 0 |
RRGGTLLYIPPGVYLTESFNLTSHMTLYLAKGAVIRATQDTRNWPLIAPLPSYGRGRELPGGRYISFIHGDGVHDVVITGENGTIDGQGDVWWNMWRQRT LQYTRPNLIEFMNSKNIIISNVIFQNSPFWNIHPVYCSNVVVRYVTILAPSDSPNTDGVDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSSD ITIRRITGSSPFSGIAVGSETSGGVENVLAEHINLHNMGVGIHIKTNIGRGGFIRNITVSDVYXEKARKGIKIAGDVGDHPDEKYNPNALPVVKGITFKD IWGVQVQQAGLILGVKNSPFTGICLSNINLHGXTGSRXPPWKCSDVSG |
Full Sequence |
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Protein Sequence Length: 443 Download |
MGSLWLSLSL LICLSYFSLS AXDPVTCSGI VPMRYRNDKI SIVDFGGVGD GVTLNTKAFR 60 EAIYRIQHLK RRGGTLLYIP PGVYLTESFN LTSHMTLYLA KGAVIRATQD TRNWPLIAPL 120 PSYGRGRELP GGRYISFIHG DGVHDVVITG ENGTIDGQGD VWWNMWRQRT LQYTRPNLIE 180 FMNSKNIIIS NVIFQNSPFW NIHPVYCSNV VVRYVTILAP SDSPNTDGVD PDSSSNVCIE 240 DSYISTGDDL VAVKSGWDEY GIAYGRPSSD ITIRRITGSS PFSGIAVGSE TSGGVENVLA 300 EHINLHNMGV GIHIKTNIGR GGFIRNITVS DVYXEKARKG IKIAGDVGDH PDEKYNPNAL 360 PVVKGITFKD IWGVQVQQAG LILGVKNSPF TGICLSNINL HGXTGSRXPP WKCSDVSGAA 420 HLVSPLQCSE LSAQQTASCT NY* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-24 | 45 | 416 | 395 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 7.0e-30 | 37 | 438 | 412 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 1.0e-31 | 40 | 406 | 378 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-36 | 137 | 416 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-55 | 41 | 404 | 399 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 1 | 431 | 1 | 431 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 4 | 442 | 6 | 446 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 1 | 431 | 1 | 431 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 33 | 442 | 1 | 411 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 14 | 442 | 16 | 445 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 3.00018e-42 | 39 | 402 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 3.00018e-42 | 39 | 402 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 3.00018e-42 | 39 | 402 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 3.00018e-42 | 39 | 402 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 9e-22 | 83 | 371 | 51 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |