y
Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_003_00639.3 |
Family | GH28 |
Protein Properties | Length: 454 Molecular Weight: 49031.2 Isoelectric Point: 5.4795 |
Chromosome | Chromosome/Scaffold: 3 Start: 8249213 End: 8255810 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 72 | 418 | 0 |
DKGGAQLYVPPGKWLTGNFHLISHLTLFLEKGAVILGSQDPSHWEVIEALPSYGRGIELPGKRYRSLITGQNLTDIVITGDNGTVDGQGSIWWEWFESHS LNYSRPNLVELIDSSDIIVSNLTFINSPSWNIHPVYCSHVQLLNITVRAPADSPYTDGIVPDSSDDVCIENCTISVGHDAISLKSGWDEYGISYGRPSTN VQINWVYLQAFFGAGLAFGSEMSGGISNVHADHLYVFDSFTGIEIKTTKGRGGYIKDILISNVRMESVNTAISVNGHFGSHPDDNFDPNALPIVDHITIK NMIGKNITTAGNLTGIHESPFTSICLSNISLIVTSEPSDSWLCSDIT |
Full Sequence |
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Protein Sequence Length: 454 Download |
MKGLVAFLLL LVLSNNVKVK GEESDGKCKL KAGLEPRPHS VSIKEFGAVG DGKTLNTIAF 60 QNAIFYLNSF ADKGGAQLYV PPGKWLTGNF HLISHLTLFL EKGAVILGSQ DPSHWEVIEA 120 LPSYGRGIEL PGKRYRSLIT GQNLTDIVIT GDNGTVDGQG SIWWEWFESH SLNYSRPNLV 180 ELIDSSDIIV SNLTFINSPS WNIHPVYCSH VQLLNITVRA PADSPYTDGI VPDSSDDVCI 240 ENCTISVGHD AISLKSGWDE YGISYGRPST NVQINWVYLQ AFFGAGLAFG SEMSGGISNV 300 HADHLYVFDS FTGIEIKTTK GRGGYIKDIL ISNVRMESVN TAISVNGHFG SHPDDNFDPN 360 ALPIVDHITI KNMIGKNITT AGNLTGIHES PFTSICLSNI SLIVTSEPSD SWLCSDITGS 420 SQSVSPKPCA DLQSSYLSSS SNYFSHSIGH AAV* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 4.0e-20 | 37 | 429 | 414 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-22 | 39 | 426 | 400 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-25 | 139 | 429 | 302 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-28 | 38 | 379 | 360 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 1.0e-51 | 41 | 353 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 14 | 429 | 12 | 427 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36899.1 | 0 | 17 | 445 | 38 | 462 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 14 | 429 | 14 | 429 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 17 | 436 | 15 | 433 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 17 | 435 | 17 | 434 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 3e-39 | 39 | 399 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 3e-39 | 39 | 399 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 3e-39 | 39 | 399 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 3e-39 | 39 | 399 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-18 | 85 | 346 | 52 | 311 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |