y
Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10020733m |
Family | GH28 |
Protein Properties | Length: 445 Molecular Weight: 47570.8 Isoelectric Point: 6.6088 |
Chromosome | Chromosome/Scaffold: 13 Start: 7247944 End: 7250170 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 75 | 419 | 0 |
DKGGAQLYVPPGKWLTGSFSLTSHLTLFLENGAVIVASQDPSHWEVVDPLPSYGRGIDLPGKRYKSLINGHMLHDVVVTGDNGTIDGQGLVWWDRFTSHS LKYNRPHLVEFISSENVIVSNLTFLNAPAYSIHSIYSSHVYIHKISAHSSPHSPYTIGIVPDSSDNVCIQNSTINMGYDAISLKSGWDEYGIAYSRPTEN VHIRNVCLGAASGSSISFGSEMSGGISDVVLENALIHNSLTGIAFRTTKGRGGYIKEIDISNVDMSRIGTAIVANGSFGSHPDDEYDANDLPLVTHIRLN NISGVDIGVAGKLFGIKESPFSSVALSNVSLSCSTVSWQCSNVYG |
Full Sequence |
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Protein Sequence Length: 445 Download |
MSVAIILVLA LTSLIPVYAK SQGAGKICVE LGRRSLSTTR PHSVSILEFG AVGDGKTLNT 60 IAFQNAVFYV MSFADKGGAQ LYVPPGKWLT GSFSLTSHLT LFLENGAVIV ASQDPSHWEV 120 VDPLPSYGRG IDLPGKRYKS LINGHMLHDV VVTGDNGTID GQGLVWWDRF TSHSLKYNRP 180 HLVEFISSEN VIVSNLTFLN APAYSIHSIY SSHVYIHKIS AHSSPHSPYT IGIVPDSSDN 240 VCIQNSTINM GYDAISLKSG WDEYGIAYSR PTENVHIRNV CLGAASGSSI SFGSEMSGGI 300 SDVVLENALI HNSLTGIAFR TTKGRGGYIK EIDISNVDMS RIGTAIVANG SFGSHPDDEY 360 DANDLPLVTH IRLNNISGVD IGVAGKLFGI KESPFSSVAL SNVSLSCSTV SWQCSNVYGS 420 SKSVIPEPCP ELKRVDNAYG IAAV* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 3.0e-13 | 39 | 426 | 399 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-13 | 33 | 417 | 405 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-15 | 29 | 429 | 429 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-19 | 149 | 417 | 275 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-25 | 44 | 356 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM65366.1 | 0 | 71 | 444 | 1 | 377 | polygalacturonase-like protein [Arabidopsis thaliana] |
RefSeq | NP_001032043.1 | 0 | 1 | 442 | 1 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_566292.1 | 0 | 71 | 444 | 1 | 377 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_680409.1 | 0 | 15 | 442 | 17 | 446 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_850525.1 | 0 | 1 | 444 | 1 | 446 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 4e-30 | 42 | 411 | 26 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 4e-30 | 42 | 411 | 26 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 4e-30 | 42 | 411 | 26 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 4e-30 | 42 | 411 | 26 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 5e-16 | 88 | 417 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |