y
Basic Information | |
---|---|
Species | Manihot esculenta |
Cazyme ID | cassava4.1_007057m |
Family | GH28 |
Protein Properties | Length: 467 Molecular Weight: 51308.6 Isoelectric Point: 5.8704 |
Chromosome | Chromosome/Scaffold: 00080 Start: 377925 End: 381010 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 75 | 417 | 0 |
KGGAELFVPAGKWLTGSFDLISHLTLWLDKDAVILGSTNPDDWPVVDPLPSYGQGRELPGGRHRSLIYGRNLTDVVITGDNGTIDGQGTIWWNWFLTKTL THTRPHLVELMNSSGIVISNLTFINSPFWTIHPVYCSHVIVQNVTIRAPLESPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGISYGRPCRNI TIHRLVGQTRTSAGIAIGSEMSGGVSEVHAENIQFYNSNTGIRIKTSPGRGGYVRNIHISNVRLTDVKIAIRFTGLYGEHPDGHYDPEALPIIERITIEN VTGDDIEYAGILEGIEADTFLDICLLNVTLNVTSNSPWNCSYI |
Full Sequence |
---|
Protein Sequence Length: 467 Download |
MRRSFTLVGV LLVLALFSNV PWLITGSSHC KRTHSAAIRP HSVTITEFGA VGDGVTLNTK 60 AFQNAIFYLN SFVDKGGAEL FVPAGKWLTG SFDLISHLTL WLDKDAVILG STNPDDWPVV 120 DPLPSYGQGR ELPGGRHRSL IYGRNLTDVV ITGDNGTIDG QGTIWWNWFL TKTLTHTRPH 180 LVELMNSSGI VISNLTFINS PFWTIHPVYC SHVIVQNVTI RAPLESPNTD GIDPDSSDNV 240 CIEDCYISTG DDLIAIKSGW DEYGISYGRP CRNITIHRLV GQTRTSAGIA IGSEMSGGVS 300 EVHAENIQFY NSNTGIRIKT SPGRGGYVRN IHISNVRLTD VKIAIRFTGL YGEHPDGHYD 360 PEALPIIERI TIENVTGDDI EYAGILEGIE ADTFLDICLL NVTLNVTSNS PWNCSYIQGY 420 SDSVSPETCE SLRESISPHH HSDCYHLSSH LLNSSNQNRG SRLLSW* 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-24 | 45 | 421 | 395 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-25 | 40 | 345 | 314 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-30 | 141 | 377 | 246 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 7.0e-31 | 41 | 351 | 317 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 2.0e-65 | 43 | 342 | 324 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37055.1 | 0 | 1 | 466 | 1 | 466 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273855.1 | 0 | 17 | 466 | 68 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301554.1 | 0 | 1 | 445 | 1 | 444 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320934.1 | 0 | 8 | 435 | 1 | 427 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002535132.1 | 0 | 4 | 466 | 14 | 476 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1.4013e-45 | 33 | 399 | 18 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1.4013e-45 | 33 | 399 | 18 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1.4013e-45 | 33 | 399 | 18 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1.4013e-45 | 33 | 399 | 18 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 3e-23 | 87 | 417 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |