y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma09g08270.1 |
Family | GH28 |
Protein Properties | Length: 495 Molecular Weight: 54698.8 Isoelectric Point: 9.5434 |
Chromosome | Chromosome/Scaffold: 09 Start: 7346575 End: 7352437 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 108 | 456 | 0 |
KGGGQLNVPPGRWLTAPFNLTSHMTLFLARDSVILAVQDEKYWPLMPALPSYGYGREHPGPRYSSLIHGQNLRDVVITGHNGTINGQGQTWWTKYRQKLL NHTRGPLVQILWSSNIVISNITLRDSPFWTLHPYDCKNVTVKNVTILAPVSHAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGITYGRPSKN IVIRNLVVRSNVSAGISIGSEMSGGVSNVLVENILVWESRRAMRIKTAPGRGGYVRQITYKNLMFKNVRVGIVIKTDYNEHPGTGYDPRALPILRDISFI NIRGQGVRVPVRIQGSEQIPVRNVTFQDMKIGITYKKKHIFQCAFVQGQ |
Full Sequence |
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Protein Sequence Length: 495 Download |
MVESTEQGGR GILGLFQFQL LHPKTTPFAS HKTLLAFLWV ATLASVLLWQ RTTISGFLVQ 60 GGVPVRAPPK LRPVVFCLTE FGGVGDGVTL NTEAFERGVG AISKLGDKGG GQLNVPPGRW 120 LTAPFNLTSH MTLFLARDSV ILAVQDEKYW PLMPALPSYG YGREHPGPRY SSLIHGQNLR 180 DVVITGHNGT INGQGQTWWT KYRQKLLNHT RGPLVQILWS SNIVISNITL RDSPFWTLHP 240 YDCKNVTVKN VTILAPVSHA PNTDGIDPDS CEDMLIEDCY ISVGDDAIAI KSGWDQYGIT 300 YGRPSKNIVI RNLVVRSNVS AGISIGSEMS GGVSNVLVEN ILVWESRRAM RIKTAPGRGG 360 YVRQITYKNL MFKNVRVGIV IKTDYNEHPG TGYDPRALPI LRDISFINIR GQGVRVPVRI 420 QGSEQIPVRN VTFQDMKIGI TYKKKHIFQC AFVQGQAIGT IFPSPCDSFD RYNEQGQLVK 480 HAASQNVTDI DYEI* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 5.0e-25 | 80 | 457 | 387 | + polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-30 | 78 | 438 | 371 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 5.0e-31 | 28 | 470 | 467 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-41 | 174 | 445 | 278 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 5.0e-65 | 52 | 389 | 363 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69988.1 | 0 | 13 | 494 | 7 | 509 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277239.1 | 0 | 13 | 494 | 7 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 16 | 494 | 13 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 28 | 494 | 28 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 13 | 494 | 8 | 494 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 78 | 438 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 78 | 438 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 78 | 438 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 78 | 438 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-21 | 120 | 438 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778855 | 453 | 1 | 450 | 0 |
FE707848 | 300 | 78 | 377 | 0 |
FN769574 | 315 | 150 | 464 | 0 |
CX102356 | 331 | 131 | 461 | 0 |
EX656855 | 270 | 86 | 355 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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