y
Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa005015m |
Family | GH28 |
Protein Properties | Length: 482 Molecular Weight: 52393.8 Isoelectric Point: 6.8297 |
Chromosome | Chromosome/Scaffold: 4 Start: 25692773 End: 25696707 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 111 | 443 | 0 |
SGGAQLNVPKGRWLTGSFNLTSNFTLFLEEGAVILGSQDPKQWPIIEPLPSYGRGRERLGGRHISLIHGDGLTNVVITGNNGTIDGQGKMWWELWWNRTL EHTRGHLLELMNSQNILISNLTFLNSPFWTIHPVYCSNVVIKDMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIKMARPSSNI IVRRVHGTTPTCSGVGIGSEMSGGISNVTIEDLHVWDSAAGVRIKTDKGRGGYIANISISNILMERVKAPIMFSRGANDHPDKGWDPKAVPQVKGIFISN VFSLNSTKAPELRGIEGASFERICFKNVTVLGL |
Full Sequence |
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Protein Sequence Length: 482 Download |
MDAEKPSILV SSIKPTWASL LLLFTIMLVL SYQTFSTMAG LPTWVGSIWP AAGSDTRSDH 60 HPSTCSGFFG GVPKRKVVMS IEAFGGVGDG ATSNTEAFRR AILHMQRFGE SGGAQLNVPK 120 GRWLTGSFNL TSNFTLFLEE GAVILGSQDP KQWPIIEPLP SYGRGRERLG GRHISLIHGD 180 GLTNVVITGN NGTIDGQGKM WWELWWNRTL EHTRGHLLEL MNSQNILISN LTFLNSPFWT 240 IHPVYCSNVV IKDMTILAPL NAPNTDGIDP DSSTNVCIED CYIESGDDLV AVKSGWDHYG 300 IKMARPSSNI IVRRVHGTTP TCSGVGIGSE MSGGISNVTI EDLHVWDSAA GVRIKTDKGR 360 GGYIANISIS NILMERVKAP IMFSRGANDH PDKGWDPKAV PQVKGIFISN VFSLNSTKAP 420 ELRGIEGASF ERICFKNVTV LGLAPSAAWH CEFVSGFANG VFPAACPQLQ DMDAFDWCLQ 480 R* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 8.0e-24 | 181 | 394 | 222 | + polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-27 | 79 | 440 | 384 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 3.0e-28 | 79 | 417 | 359 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-33 | 177 | 447 | 285 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-60 | 78 | 398 | 348 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN76963.1 | 0 | 41 | 474 | 32 | 461 | hypothetical protein [Vitis vinifera] |
EMBL | CBI37530.1 | 0 | 41 | 481 | 43 | 479 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002274138.1 | 0 | 41 | 481 | 43 | 479 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002310517.1 | 0 | 54 | 478 | 15 | 434 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526639.1 | 0 | 64 | 478 | 60 | 477 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 3.00004e-41 | 72 | 447 | 23 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 3.00004e-41 | 72 | 447 | 23 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 3.00004e-41 | 72 | 447 | 23 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 3.00004e-41 | 72 | 447 | 23 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 3e-25 | 123 | 383 | 52 | 310 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |