y
Basic Information | |
---|---|
Species | Gossypium raimondii |
Cazyme ID | Gorai.007G102200.1 |
Family | GH28 |
Protein Properties | Length: 483 Molecular Weight: 52552.1 Isoelectric Point: 7.2454 |
Chromosome | Chromosome/Scaffold: 07 Start: 7611951 End: 7614445 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 85 | 434 | 0 |
ANGGGAQLYVPAGQWLTGSFSLTSHFTLYLHKDAVLLASQDMSEWPVLKALPSYGRGRDAAGGRFASLIFGTNLTDVVVTGANGTIDGQGAFWWQNFHKG KLKYTRPYLIEFMYSDNIQISNLTLLNSPSWNVHPVYSSNILVQGITIIAPITSPNTDGINPDSCTNVRIEDSYIVSGDDCIAVKSGWDEYGISFGMPTK QLVIRRLTCISPYSAAIALGSEMSGGIEDVRAEDITAIHTESGVRIKTARGRGGFVKDIYVKGMTLHTMKWVFWMTGNYKAHADNHYDPKALPVIQGINY RDIMADNVSMAARLEGIEGDPFTQICISNVTIGMAAKAKKVPWTCTDVEG |
Full Sequence |
---|
Protein Sequence Length: 483 Download |
MELARMILMR IQVTGIATLL VLVALILGQK GAEARKGRIL ESFEYIAMSC RAHSASITDF 60 GGIGDGKTSN TKAFQDAVNH LSQYANGGGA QLYVPAGQWL TGSFSLTSHF TLYLHKDAVL 120 LASQDMSEWP VLKALPSYGR GRDAAGGRFA SLIFGTNLTD VVVTGANGTI DGQGAFWWQN 180 FHKGKLKYTR PYLIEFMYSD NIQISNLTLL NSPSWNVHPV YSSNILVQGI TIIAPITSPN 240 TDGINPDSCT NVRIEDSYIV SGDDCIAVKS GWDEYGISFG MPTKQLVIRR LTCISPYSAA 300 IALGSEMSGG IEDVRAEDIT AIHTESGVRI KTARGRGGFV KDIYVKGMTL HTMKWVFWMT 360 GNYKAHADNH YDPKALPVIQ GINYRDIMAD NVSMAARLEG IEGDPFTQIC ISNVTIGMAA 420 KAKKVPWTCT DVEGISSGVS PRPCDQLPDQ GPEKITACDF PAEPLSIDRV VLKSCTYRMK 480 YT* 540 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-22 | 56 | 437 | 402 | + polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-29 | 35 | 442 | 425 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 3.0e-29 | 52 | 441 | 404 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 3.0e-32 | 153 | 351 | 204 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 7.0e-56 | 55 | 357 | 332 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A7PZL3 | 0 | 32 | 481 | 40 | 489 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
RefSeq | XP_002277736.1 | 0 | 32 | 481 | 28 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002278930.1 | 0 | 30 | 481 | 28 | 479 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301370.1 | 0 | 30 | 481 | 18 | 469 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511903.1 | 0 | 1 | 481 | 1 | 471 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 53 | 416 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 53 | 416 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 53 | 416 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 53 | 416 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-17 | 71 | 353 | 26 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |